Results 41 - 60 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11335 | 3' | -53.2 | NC_003084.1 | + | 63732 | 0.68 | 0.858727 |
Target: 5'- --cGUUuccAGCACCAgCAGCGGauGCCg -3' miRNA: 3'- uuaCAA---UCGUGGUgGUUGCUgcCGGg -5' |
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11335 | 3' | -53.2 | NC_003084.1 | + | 65592 | 0.66 | 0.937878 |
Target: 5'- -----cGGCA-CACCAACGGUGGUCCc -3' miRNA: 3'- uuacaaUCGUgGUGGUUGCUGCCGGG- -5' |
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11335 | 3' | -53.2 | NC_003084.1 | + | 66247 | 0.66 | 0.937878 |
Target: 5'- -cUGUUuGCACCccuCCucCGAgaGGCCCa -3' miRNA: 3'- uuACAAuCGUGGu--GGuuGCUg-CCGGG- -5' |
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11335 | 3' | -53.2 | NC_003084.1 | + | 68293 | 0.66 | 0.937878 |
Target: 5'- cGAUGaaguGCACCACCAAC--CGGuuCCCa -3' miRNA: 3'- -UUACaau-CGUGGUGGUUGcuGCC--GGG- -5' |
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11335 | 3' | -53.2 | NC_003084.1 | + | 68425 | 0.94 | 0.034153 |
Target: 5'- -uUGUUGGCACCACCGACuACGGCCCc -3' miRNA: 3'- uuACAAUCGUGGUGGUUGcUGCCGGG- -5' |
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11335 | 3' | -53.2 | NC_003084.1 | + | 68507 | 1.06 | 0.005344 |
Target: 5'- -cUGUUAGCACCACCAACGACGGCCCc -3' miRNA: 3'- uuACAAUCGUGGUGGUUGCUGCCGGG- -5' |
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11335 | 3' | -53.2 | NC_003084.1 | + | 68567 | 0.75 | 0.475323 |
Target: 5'- -uUGUagcUAGCACCACaAACaACGGCCCc -3' miRNA: 3'- uuACA---AUCGUGGUGgUUGcUGCCGGG- -5' |
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11335 | 3' | -53.2 | NC_003084.1 | + | 68675 | 0.74 | 0.525929 |
Target: 5'- aAAUGUUAGCACCACaAAUGuugGGUCCa -3' miRNA: 3'- -UUACAAUCGUGGUGgUUGCug-CCGGG- -5' |
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11335 | 3' | -53.2 | NC_003084.1 | + | 68682 | 0.97 | 0.020331 |
Target: 5'- cAGUGUUAGCACCACCGACaACGGCCCc -3' miRNA: 3'- -UUACAAUCGUGGUGGUUGcUGCCGGG- -5' |
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11335 | 3' | -53.2 | NC_003084.1 | + | 68737 | 0.74 | 0.557253 |
Target: 5'- uGUGUUAGCACgACCGAC-ACcgGGUCCa -3' miRNA: 3'- uUACAAUCGUGgUGGUUGcUG--CCGGG- -5' |
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11335 | 3' | -53.2 | NC_003084.1 | + | 68811 | 0.73 | 0.578432 |
Target: 5'- ----cUAGCACCACCGuuauCGGCCCc -3' miRNA: 3'- uuacaAUCGUGGUGGUugcuGCCGGG- -5' |
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11335 | 3' | -53.2 | NC_003084.1 | + | 71974 | 0.7 | 0.737817 |
Target: 5'- --aGgcGGCGCuCACCAACGuCGGUUCu -3' miRNA: 3'- uuaCaaUCGUG-GUGGUUGCuGCCGGG- -5' |
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11335 | 3' | -53.2 | NC_003084.1 | + | 75319 | 0.67 | 0.889155 |
Target: 5'- gGGUGUUGcccgcGUACaugGCCAACGugGGCUUc -3' miRNA: 3'- -UUACAAU-----CGUGg--UGGUUGCugCCGGG- -5' |
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11335 | 3' | -53.2 | NC_003084.1 | + | 75443 | 0.66 | 0.937878 |
Target: 5'- aAAUGUUGGguCCACUAGagUGGgGGCgCa -3' miRNA: 3'- -UUACAAUCguGGUGGUU--GCUgCCGgG- -5' |
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11335 | 3' | -53.2 | NC_003084.1 | + | 77228 | 0.75 | 0.455764 |
Target: 5'- -uUGUUGGgGaaGCCAgcACGGCGGCCCu -3' miRNA: 3'- uuACAAUCgUggUGGU--UGCUGCCGGG- -5' |
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11335 | 3' | -53.2 | NC_003084.1 | + | 77990 | 0.68 | 0.848875 |
Target: 5'- cAAUGUUgagAGUACCGguCCAACGcuuuuggguaacCGGCCCg -3' miRNA: 3'- -UUACAA---UCGUGGU--GGUUGCu-----------GCCGGG- -5' |
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11335 | 3' | -53.2 | NC_003084.1 | + | 82189 | 0.69 | 0.797123 |
Target: 5'- ---aUUAGCACCGCCAA--ACGGUUCu -3' miRNA: 3'- uuacAAUCGUGGUGGUUgcUGCCGGG- -5' |
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11335 | 3' | -53.2 | NC_003084.1 | + | 88777 | 0.66 | 0.927268 |
Target: 5'- --aGUUccaAGCACCACCG-C-AUGGCCg -3' miRNA: 3'- uuaCAA---UCGUGGUGGUuGcUGCCGGg -5' |
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11335 | 3' | -53.2 | NC_003084.1 | + | 90608 | 0.69 | 0.815687 |
Target: 5'- -uUG-UAGCACCG--GACGAUGGCUCu -3' miRNA: 3'- uuACaAUCGUGGUggUUGCUGCCGGG- -5' |
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11335 | 3' | -53.2 | NC_003084.1 | + | 91233 | 0.67 | 0.896151 |
Target: 5'- -----aAGCACggaCACCAACGuguGGCCCu -3' miRNA: 3'- uuacaaUCGUG---GUGGUUGCug-CCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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