miRNA display CGI


Results 41 - 60 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11335 3' -53.2 NC_003084.1 + 49248 0.74 0.525929
Target:  5'- aAAUGUUAGCACCACaAAUGuugGGUCCa -3'
miRNA:   3'- -UUACAAUCGUGGUGgUUGCug-CCGGG- -5'
11335 3' -53.2 NC_003084.1 + 49163 0.74 0.525929
Target:  5'- aAAUGUUAGCACCACaAAUGuugGGUCCa -3'
miRNA:   3'- -UUACAAUCGUGGUGgUUGCug-CCGGG- -5'
11335 3' -53.2 NC_003084.1 + 49078 0.71 0.685509
Target:  5'- aAAUGUUAGCACCGuauacggaggguCCAcuuuCGugGGgCCg -3'
miRNA:   3'- -UUACAAUCGUGGU------------GGUu---GCugCCgGG- -5'
11335 3' -53.2 NC_003084.1 + 48202 0.68 0.858727
Target:  5'- cGGUGgUAGCACCACUccuCGACGcacacCCCa -3'
miRNA:   3'- -UUACaAUCGUGGUGGuu-GCUGCc----GGG- -5'
11335 3' -53.2 NC_003084.1 + 46969 0.67 0.881909
Target:  5'- --cGUUAaGCAgCAgUCAACGugGGCaCCg -3'
miRNA:   3'- uuaCAAU-CGUgGU-GGUUGCugCCG-GG- -5'
11335 3' -53.2 NC_003084.1 + 46405 0.68 0.833517
Target:  5'- gAAUGUUAcGCACCGCacucuCGAcCGGUCUa -3'
miRNA:   3'- -UUACAAU-CGUGGUGguu--GCU-GCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 44165 0.66 0.932705
Target:  5'- -----gAGCGCCgcauugaugACCAGCG-CGGCuCCa -3'
miRNA:   3'- uuacaaUCGUGG---------UGGUUGCuGCCG-GG- -5'
11335 3' -53.2 NC_003084.1 + 39107 0.66 0.914994
Target:  5'- ----cUGGCAgCACCGAuucaccccgagcuCGuGCGGCCCg -3'
miRNA:   3'- uuacaAUCGUgGUGGUU-------------GC-UGCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 37962 0.66 0.937878
Target:  5'- --aGUUAGC-CCaACCAA-GACgGGUCCa -3'
miRNA:   3'- uuaCAAUCGuGG-UGGUUgCUG-CCGGG- -5'
11335 3' -53.2 NC_003084.1 + 37800 0.78 0.356729
Target:  5'- ---uUUAGCACCGCaAAUGugGGCCCc -3'
miRNA:   3'- uuacAAUCGUGGUGgUUGCugCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 36197 0.7 0.76807
Target:  5'- ------cGCACCGCCAACuGGUGGUCCa -3'
miRNA:   3'- uuacaauCGUGGUGGUUG-CUGCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 34246 0.68 0.842133
Target:  5'- cGUGUUGGCcauugcagguCCACuCGGCGaaGCGGCCg -3'
miRNA:   3'- uUACAAUCGu---------GGUG-GUUGC--UGCCGGg -5'
11335 3' -53.2 NC_003084.1 + 33523 0.72 0.621232
Target:  5'- cAAUGU--GCACC-CgGACGuGCGGCCCa -3'
miRNA:   3'- -UUACAauCGUGGuGgUUGC-UGCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 32649 0.68 0.874418
Target:  5'- -cUGUacccauCACCACCGaacAUGACGGCUCg -3'
miRNA:   3'- uuACAauc---GUGGUGGU---UGCUGCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 31946 0.77 0.365087
Target:  5'- --gGUUGGCACCACCG-CGGgcuCGGCCg -3'
miRNA:   3'- uuaCAAUCGUGGUGGUuGCU---GCCGGg -5'
11335 3' -53.2 NC_003084.1 + 31539 0.71 0.69611
Target:  5'- aGGUGUUuauccGguCCGCCAACaGugGGUCCa -3'
miRNA:   3'- -UUACAAu----CguGGUGGUUG-CugCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 30401 0.69 0.806492
Target:  5'- cAGUGUgAGUcgagGCCACCAuGCGACGGUg- -3'
miRNA:   3'- -UUACAaUCG----UGGUGGU-UGCUGCCGgg -5'
11335 3' -53.2 NC_003084.1 + 27065 0.66 0.932705
Target:  5'- -----aAGCGCUACCAgugguuACGGauGCCCg -3'
miRNA:   3'- uuacaaUCGUGGUGGU------UGCUgcCGGG- -5'
11335 3' -53.2 NC_003084.1 + 25730 0.71 0.717124
Target:  5'- cGAUGUauGCAgCACCA---GCGGCCCg -3'
miRNA:   3'- -UUACAauCGUgGUGGUugcUGCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 25499 0.75 0.485258
Target:  5'- uAUGUUugcgauacAGCugUACCAACGcacCGGCCCg -3'
miRNA:   3'- uUACAA--------UCGugGUGGUUGCu--GCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.