Results 61 - 70 of 70 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 11335 | 3' | -53.2 | NC_003084.1 | + | 22284 | 0.68 | 0.836988 |
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Target: 5'- cGUGcUGGUaaaaacuuuaaccucACCACCAACGuuCGGCCa -3' miRNA: 3'- uUACaAUCG---------------UGGUGGUUGCu-GCCGGg -5' |
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| 11335 | 3' | -53.2 | NC_003084.1 | + | 20812 | 0.67 | 0.889155 |
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Target: 5'- -----cGGCACgCAaacuCCAGCGcccaGCGGCCCa -3' miRNA: 3'- uuacaaUCGUG-GU----GGUUGC----UGCCGGG- -5' |
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| 11335 | 3' | -53.2 | NC_003084.1 | + | 16931 | 0.66 | 0.937878 |
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Target: 5'- --aGUgAGCAcgaguCCACCucCGAUGaGCCCg -3' miRNA: 3'- uuaCAaUCGU-----GGUGGuuGCUGC-CGGG- -5' |
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| 11335 | 3' | -53.2 | NC_003084.1 | + | 16611 | 0.7 | 0.777902 |
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Target: 5'- ----cUAGCAacuuuUCACCucCGGCGGCCCc -3' miRNA: 3'- uuacaAUCGU-----GGUGGuuGCUGCCGGG- -5' |
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| 11335 | 3' | -53.2 | NC_003084.1 | + | 15758 | 0.67 | 0.881909 |
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Target: 5'- cAUGUU-GCGCCACCugAACG-CGGacaCCa -3' miRNA: 3'- uUACAAuCGUGGUGG--UUGCuGCCg--GG- -5' |
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| 11335 | 3' | -53.2 | NC_003084.1 | + | 9407 | 0.69 | 0.787589 |
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Target: 5'- cGAUG-UAGCACCACCuguaGcCGaGCCCc -3' miRNA: 3'- -UUACaAUCGUGGUGGuug-CuGC-CGGG- -5' |
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| 11335 | 3' | -53.2 | NC_003084.1 | + | 7015 | 0.68 | 0.833517 |
|
Target: 5'- -----cAGCACCACCGuaucccACcACGGUCCa -3' miRNA: 3'- uuacaaUCGUGGUGGU------UGcUGCCGGG- -5' |
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| 11335 | 3' | -53.2 | NC_003084.1 | + | 6903 | 0.69 | 0.797123 |
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Target: 5'- ----aUGGaCugCGCCAACuGGCGGCCa -3' miRNA: 3'- uuacaAUC-GugGUGGUUG-CUGCCGGg -5' |
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| 11335 | 3' | -53.2 | NC_003084.1 | + | 1294 | 0.68 | 0.842133 |
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Target: 5'- ------cGCGuCCACCAcucuaGCGugGGCCUg -3' miRNA: 3'- uuacaauCGU-GGUGGU-----UGCugCCGGG- -5' |
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| 11335 | 3' | -53.2 | NC_003084.1 | + | 1109 | 0.66 | 0.921568 |
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Target: 5'- ---uUUAGCAUCACCAGu--CGGCCg -3' miRNA: 3'- uuacAAUCGUGGUGGUUgcuGCCGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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