miRNA display CGI


Results 41 - 60 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11335 3' -53.2 NC_003084.1 + 93986 0.68 0.836988
Target:  5'- --aGUUGGCACCAUCuugugccgcagucCGGCGGUCg -3'
miRNA:   3'- uuaCAAUCGUGGUGGuu-----------GCUGCCGGg -5'
11335 3' -53.2 NC_003084.1 + 22284 0.68 0.836988
Target:  5'- cGUGcUGGUaaaaacuuuaaccucACCACCAACGuuCGGCCa -3'
miRNA:   3'- uUACaAUCG---------------UGGUGGUUGCu-GCCGGg -5'
11335 3' -53.2 NC_003084.1 + 34246 0.68 0.842133
Target:  5'- cGUGUUGGCcauugcagguCCACuCGGCGaaGCGGCCg -3'
miRNA:   3'- uUACAAUCGu---------GGUG-GUUGC--UGCCGGg -5'
11335 3' -53.2 NC_003084.1 + 77990 0.68 0.848875
Target:  5'- cAAUGUUgagAGUACCGguCCAACGcuuuuggguaacCGGCCCg -3'
miRNA:   3'- -UUACAA---UCGUGGU--GGUUGCu-----------GCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 48202 0.68 0.858727
Target:  5'- cGGUGgUAGCACCACUccuCGACGcacacCCCa -3'
miRNA:   3'- -UUACaAUCGUGGUGGuu-GCUGCc----GGG- -5'
11335 3' -53.2 NC_003084.1 + 32649 0.68 0.874418
Target:  5'- -cUGUacccauCACCACCGaacAUGACGGCUCg -3'
miRNA:   3'- uuACAauc---GUGGUGGU---UGCUGCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 51457 0.67 0.889155
Target:  5'- -----cAGCACCGguccaccuUCAACcACGGCCCa -3'
miRNA:   3'- uuacaaUCGUGGU--------GGUUGcUGCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 82189 0.69 0.797123
Target:  5'- ---aUUAGCACCGCCAA--ACGGUUCu -3'
miRNA:   3'- uuacAAUCGUGGUGGUUgcUGCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 36197 0.7 0.76807
Target:  5'- ------cGCACCGCCAACuGGUGGUCCa -3'
miRNA:   3'- uuacaauCGUGGUGGUUG-CUGCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 31539 0.71 0.69611
Target:  5'- aGGUGUUuauccGguCCGCCAACaGugGGUCCa -3'
miRNA:   3'- -UUACAAu----CguGGUGGUUG-CugCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 49418 0.98 0.018641
Target:  5'- aAAUGUUAGCACCACCAACuACGGCCCc -3'
miRNA:   3'- -UUACAAUCGUGGUGGUUGcUGCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 49249 0.98 0.018641
Target:  5'- aAAUGUUAGCACCACCAACuACGGCCCc -3'
miRNA:   3'- -UUACAAUCGUGGUGGUUGcUGCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 49503 0.9 0.062158
Target:  5'- aAAUGcUAGCACCACCAACuACGGCCCc -3'
miRNA:   3'- -UUACaAUCGUGGUGGUUGcUGCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 49584 0.89 0.075714
Target:  5'- gAAUGcUAGCACgACUAACGACGGCCCc -3'
miRNA:   3'- -UUACaAUCGUGgUGGUUGCUGCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 49673 0.78 0.324659
Target:  5'- aAAUGUUGGCACCACCAccccagcucACcgguACGGCUCa -3'
miRNA:   3'- -UUACAAUCGUGGUGGU---------UGc---UGCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 31946 0.77 0.365087
Target:  5'- --gGUUGGCACCACCG-CGGgcuCGGCCg -3'
miRNA:   3'- uuaCAAUCGUGGUGGUuGCU---GCCGGg -5'
11335 3' -53.2 NC_003084.1 + 25499 0.75 0.485258
Target:  5'- uAUGUUugcgauacAGCugUACCAACGcacCGGCCCg -3'
miRNA:   3'- uUACAA--------UCGugGUGGUUGCu--GCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 68675 0.74 0.525929
Target:  5'- aAAUGUUAGCACCACaAAUGuugGGUCCa -3'
miRNA:   3'- -UUACAAUCGUGGUGgUUGCug-CCGGG- -5'
11335 3' -53.2 NC_003084.1 + 68737 0.74 0.557253
Target:  5'- uGUGUUAGCACgACCGAC-ACcgGGUCCa -3'
miRNA:   3'- uUACAAUCGUGgUGGUUGcUG--CCGGG- -5'
11335 3' -53.2 NC_003084.1 + 33523 0.72 0.621232
Target:  5'- cAAUGU--GCACC-CgGACGuGCGGCCCa -3'
miRNA:   3'- -UUACAauCGUGGuGgUUGC-UGCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.