miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11335 3' -53.2 NC_003084.1 + 93838 0.69 0.806492
Target:  5'- ----aUAGUGCCGCuCAACuuGACGGCCa -3'
miRNA:   3'- uuacaAUCGUGGUG-GUUG--CUGCCGGg -5'
11335 3' -53.2 NC_003084.1 + 68675 0.74 0.525929
Target:  5'- aAAUGUUAGCACCACaAAUGuugGGUCCa -3'
miRNA:   3'- -UUACAAUCGUGGUGgUUGCug-CCGGG- -5'
11335 3' -53.2 NC_003084.1 + 91233 0.67 0.896151
Target:  5'- -----aAGCACggaCACCAACGuguGGCCCu -3'
miRNA:   3'- uuacaaUCGUG---GUGGUUGCug-CCGGG- -5'
11335 3' -53.2 NC_003084.1 + 22284 0.68 0.836988
Target:  5'- cGUGcUGGUaaaaacuuuaaccucACCACCAACGuuCGGCCa -3'
miRNA:   3'- uUACaAUCG---------------UGGUGGUUGCu-GCCGGg -5'
11335 3' -53.2 NC_003084.1 + 25499 0.75 0.485258
Target:  5'- uAUGUUugcgauacAGCugUACCAACGcacCGGCCCg -3'
miRNA:   3'- uUACAA--------UCGugGUGGUUGCu--GCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 75319 0.67 0.889155
Target:  5'- gGGUGUUGcccgcGUACaugGCCAACGugGGCUUc -3'
miRNA:   3'- -UUACAAU-----CGUGg--UGGUUGCugCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 31946 0.77 0.365087
Target:  5'- --gGUUGGCACCACCG-CGGgcuCGGCCg -3'
miRNA:   3'- uuaCAAUCGUGGUGGUuGCU---GCCGGg -5'
11335 3' -53.2 NC_003084.1 + 49673 0.78 0.324659
Target:  5'- aAAUGUUGGCACCACCAccccagcucACcgguACGGCUCa -3'
miRNA:   3'- -UUACAAUCGUGGUGGU---------UGc---UGCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 34246 0.68 0.842133
Target:  5'- cGUGUUGGCcauugcagguCCACuCGGCGaaGCGGCCg -3'
miRNA:   3'- uUACAAUCGu---------GGUG-GUUGC--UGCCGGg -5'
11335 3' -53.2 NC_003084.1 + 44165 0.66 0.932705
Target:  5'- -----gAGCGCCgcauugaugACCAGCG-CGGCuCCa -3'
miRNA:   3'- uuacaaUCGUGG---------UGGUUGCuGCCG-GG- -5'
11335 3' -53.2 NC_003084.1 + 36197 0.7 0.76807
Target:  5'- ------cGCACCGCCAACuGGUGGUCCa -3'
miRNA:   3'- uuacaauCGUGGUGGUUG-CUGCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 68737 0.74 0.557253
Target:  5'- uGUGUUAGCACgACCGAC-ACcgGGUCCa -3'
miRNA:   3'- uUACAAUCGUGgUGGUUGcUG--CCGGG- -5'
11335 3' -53.2 NC_003084.1 + 32649 0.68 0.874418
Target:  5'- -cUGUacccauCACCACCGaacAUGACGGCUCg -3'
miRNA:   3'- uuACAauc---GUGGUGGU---UGCUGCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 39107 0.66 0.914994
Target:  5'- ----cUGGCAgCACCGAuucaccccgagcuCGuGCGGCCCg -3'
miRNA:   3'- uuacaAUCGUgGUGGUU-------------GC-UGCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 16611 0.7 0.777902
Target:  5'- ----cUAGCAacuuuUCACCucCGGCGGCCCc -3'
miRNA:   3'- uuacaAUCGU-----GGUGGuuGCUGCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 71974 0.7 0.737817
Target:  5'- --aGgcGGCGCuCACCAACGuCGGUUCu -3'
miRNA:   3'- uuaCaaUCGUG-GUGGUUGCuGCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 88777 0.66 0.927268
Target:  5'- --aGUUccaAGCACCACCG-C-AUGGCCg -3'
miRNA:   3'- uuaCAA---UCGUGGUGGUuGcUGCCGGg -5'
11335 3' -53.2 NC_003084.1 + 49163 0.74 0.525929
Target:  5'- aAAUGUUAGCACCACaAAUGuugGGUCCa -3'
miRNA:   3'- -UUACAAUCGUGGUGgUUGCug-CCGGG- -5'
11335 3' -53.2 NC_003084.1 + 1109 0.66 0.921568
Target:  5'- ---uUUAGCAUCACCAGu--CGGCCg -3'
miRNA:   3'- uuacAAUCGUGGUGGUUgcuGCCGGg -5'
11335 3' -53.2 NC_003084.1 + 105639 0.66 0.921568
Target:  5'- ---uUUAGCAUCACCAGu--CGGCCg -3'
miRNA:   3'- uuacAAUCGUGGUGGUUgcuGCCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.