Results 41 - 60 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11335 | 3' | -53.2 | NC_003084.1 | + | 49163 | 0.74 | 0.525929 |
Target: 5'- aAAUGUUAGCACCACaAAUGuugGGUCCa -3' miRNA: 3'- -UUACAAUCGUGGUGgUUGCug-CCGGG- -5' |
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11335 | 3' | -53.2 | NC_003084.1 | + | 68567 | 0.75 | 0.475323 |
Target: 5'- -uUGUagcUAGCACCACaAACaACGGCCCc -3' miRNA: 3'- uuACA---AUCGUGGUGgUUGcUGCCGGG- -5' |
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11335 | 3' | -53.2 | NC_003084.1 | + | 77228 | 0.75 | 0.455764 |
Target: 5'- -uUGUUGGgGaaGCCAgcACGGCGGCCCu -3' miRNA: 3'- uuACAAUCgUggUGGU--UGCUGCCGGG- -5' |
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11335 | 3' | -53.2 | NC_003084.1 | + | 88777 | 0.66 | 0.927268 |
Target: 5'- --aGUUccaAGCACCACCG-C-AUGGCCg -3' miRNA: 3'- uuaCAA---UCGUGGUGGUuGcUGCCGGg -5' |
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11335 | 3' | -53.2 | NC_003084.1 | + | 68425 | 0.94 | 0.034153 |
Target: 5'- -uUGUUGGCACCACCGACuACGGCCCc -3' miRNA: 3'- uuACAAUCGUGGUGGUUGcUGCCGGG- -5' |
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11335 | 3' | -53.2 | NC_003084.1 | + | 105639 | 0.66 | 0.921568 |
Target: 5'- ---uUUAGCAUCACCAGu--CGGCCg -3' miRNA: 3'- uuacAAUCGUGGUGGUUgcuGCCGGg -5' |
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11335 | 3' | -53.2 | NC_003084.1 | + | 49078 | 0.71 | 0.685509 |
Target: 5'- aAAUGUUAGCACCGuauacggaggguCCAcuuuCGugGGgCCg -3' miRNA: 3'- -UUACAAUCGUGGU------------GGUu---GCugCCgGG- -5' |
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11335 | 3' | -53.2 | NC_003084.1 | + | 25730 | 0.71 | 0.717124 |
Target: 5'- cGAUGUauGCAgCACCA---GCGGCCCg -3' miRNA: 3'- -UUACAauCGUgGUGGUugcUGCCGGG- -5' |
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11335 | 3' | -53.2 | NC_003084.1 | + | 71974 | 0.7 | 0.737817 |
Target: 5'- --aGgcGGCGCuCACCAACGuCGGUUCu -3' miRNA: 3'- uuaCaaUCGUG-GUGGUUGCuGCCGGG- -5' |
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11335 | 3' | -53.2 | NC_003084.1 | + | 75443 | 0.66 | 0.937878 |
Target: 5'- aAAUGUUGGguCCACUAGagUGGgGGCgCa -3' miRNA: 3'- -UUACAAUCguGGUGGUU--GCUgCCGgG- -5' |
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11335 | 3' | -53.2 | NC_003084.1 | + | 15758 | 0.67 | 0.881909 |
Target: 5'- cAUGUU-GCGCCACCugAACG-CGGacaCCa -3' miRNA: 3'- uUACAAuCGUGGUGG--UUGCuGCCg--GG- -5' |
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11335 | 3' | -53.2 | NC_003084.1 | + | 46969 | 0.67 | 0.881909 |
Target: 5'- --cGUUAaGCAgCAgUCAACGugGGCaCCg -3' miRNA: 3'- uuaCAAU-CGUgGU-GGUUGCugCCG-GG- -5' |
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11335 | 3' | -53.2 | NC_003084.1 | + | 95351 | 0.68 | 0.866689 |
Target: 5'- -----gAGCACCACUg--GACGGCCg -3' miRNA: 3'- uuacaaUCGUGGUGGuugCUGCCGGg -5' |
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11335 | 3' | -53.2 | NC_003084.1 | + | 63732 | 0.68 | 0.858727 |
Target: 5'- --cGUUuccAGCACCAgCAGCGGauGCCg -3' miRNA: 3'- uuaCAA---UCGUGGUgGUUGCUgcCGGg -5' |
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11335 | 3' | -53.2 | NC_003084.1 | + | 61003 | 0.68 | 0.842133 |
Target: 5'- -----aAGCACCACCgAACGACcgcuuguaccaGGCUCu -3' miRNA: 3'- uuacaaUCGUGGUGG-UUGCUG-----------CCGGG- -5' |
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11335 | 3' | -53.2 | NC_003084.1 | + | 1294 | 0.68 | 0.842133 |
Target: 5'- ------cGCGuCCACCAcucuaGCGugGGCCUg -3' miRNA: 3'- uuacaauCGU-GGUGGU-----UGCugCCGGG- -5' |
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11335 | 3' | -53.2 | NC_003084.1 | + | 7015 | 0.68 | 0.833517 |
Target: 5'- -----cAGCACCACCGuaucccACcACGGUCCa -3' miRNA: 3'- uuacaaUCGUGGUGGU------UGcUGCCGGG- -5' |
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11335 | 3' | -53.2 | NC_003084.1 | + | 102200 | 0.67 | 0.881909 |
Target: 5'- -----cGGCACCACCGugGACacacgcuauggGGCUa -3' miRNA: 3'- uuacaaUCGUGGUGGUugCUG-----------CCGGg -5' |
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11335 | 3' | -53.2 | NC_003084.1 | + | 95103 | 0.67 | 0.909379 |
Target: 5'- uGGUGUgcacGGCuuugGCUACCuguACGGCGGCUg -3' miRNA: 3'- -UUACAa---UCG----UGGUGGu--UGCUGCCGGg -5' |
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11335 | 3' | -53.2 | NC_003084.1 | + | 16611 | 0.7 | 0.777902 |
Target: 5'- ----cUAGCAacuuuUCACCucCGGCGGCCCc -3' miRNA: 3'- uuacaAUCGU-----GGUGGuuGCUGCCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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