Results 61 - 70 of 70 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 11335 | 3' | -53.2 | NC_003084.1 | + | 105639 | 0.66 | 0.921568 |
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Target: 5'- ---uUUAGCAUCACCAGu--CGGCCg -3' miRNA: 3'- uuacAAUCGUGGUGGUUgcuGCCGGg -5' |
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| 11335 | 3' | -53.2 | NC_003084.1 | + | 104677 | 0.66 | 0.921568 |
|
Target: 5'- ------uGCACCACCAGCGcCGaGUUCa -3' miRNA: 3'- uuacaauCGUGGUGGUUGCuGC-CGGG- -5' |
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| 11335 | 3' | -53.2 | NC_003084.1 | + | 95103 | 0.67 | 0.909379 |
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Target: 5'- uGGUGUgcacGGCuuugGCUACCuguACGGCGGCUg -3' miRNA: 3'- -UUACAa---UCG----UGGUGGu--UGCUGCCGGg -5' |
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| 11335 | 3' | -53.2 | NC_003084.1 | + | 102200 | 0.67 | 0.881909 |
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Target: 5'- -----cGGCACCACCGugGACacacgcuauggGGCUa -3' miRNA: 3'- uuacaaUCGUGGUGGUugCUG-----------CCGGg -5' |
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| 11335 | 3' | -53.2 | NC_003084.1 | + | 46969 | 0.67 | 0.881909 |
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Target: 5'- --cGUUAaGCAgCAgUCAACGugGGCaCCg -3' miRNA: 3'- uuaCAAU-CGUgGU-GGUUGCugCCG-GG- -5' |
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| 11335 | 3' | -53.2 | NC_003084.1 | + | 15758 | 0.67 | 0.881909 |
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Target: 5'- cAUGUU-GCGCCACCugAACG-CGGacaCCa -3' miRNA: 3'- uUACAAuCGUGGUGG--UUGCuGCCg--GG- -5' |
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| 11335 | 3' | -53.2 | NC_003084.1 | + | 95351 | 0.68 | 0.866689 |
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Target: 5'- -----gAGCACCACUg--GACGGCCg -3' miRNA: 3'- uuacaaUCGUGGUGGuugCUGCCGGg -5' |
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| 11335 | 3' | -53.2 | NC_003084.1 | + | 63732 | 0.68 | 0.858727 |
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Target: 5'- --cGUUuccAGCACCAgCAGCGGauGCCg -3' miRNA: 3'- uuaCAA---UCGUGGUgGUUGCUgcCGGg -5' |
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| 11335 | 3' | -53.2 | NC_003084.1 | + | 61003 | 0.68 | 0.842133 |
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Target: 5'- -----aAGCACCACCgAACGACcgcuuguaccaGGCUCu -3' miRNA: 3'- uuacaaUCGUGGUGG-UUGCUG-----------CCGGG- -5' |
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| 11335 | 3' | -53.2 | NC_003084.1 | + | 68507 | 1.06 | 0.005344 |
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Target: 5'- -cUGUUAGCACCACCAACGACGGCCCc -3' miRNA: 3'- uuACAAUCGUGGUGGUUGCUGCCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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