miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11335 3' -53.2 NC_003084.1 + 75319 0.67 0.889155
Target:  5'- gGGUGUUGcccgcGUACaugGCCAACGugGGCUUc -3'
miRNA:   3'- -UUACAAU-----CGUGg--UGGUUGCugCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 102200 0.67 0.881909
Target:  5'- -----cGGCACCACCGugGACacacgcuauggGGCUa -3'
miRNA:   3'- uuacaaUCGUGGUGGUugCUG-----------CCGGg -5'
11335 3' -53.2 NC_003084.1 + 46969 0.67 0.881909
Target:  5'- --cGUUAaGCAgCAgUCAACGugGGCaCCg -3'
miRNA:   3'- uuaCAAU-CGUgGU-GGUUGCugCCG-GG- -5'
11335 3' -53.2 NC_003084.1 + 15758 0.67 0.881909
Target:  5'- cAUGUU-GCGCCACCugAACG-CGGacaCCa -3'
miRNA:   3'- uUACAAuCGUGGUGG--UUGCuGCCg--GG- -5'
11335 3' -53.2 NC_003084.1 + 32649 0.68 0.874418
Target:  5'- -cUGUacccauCACCACCGaacAUGACGGCUCg -3'
miRNA:   3'- uuACAauc---GUGGUGGU---UGCUGCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 95351 0.68 0.866689
Target:  5'- -----gAGCACCACUg--GACGGCCg -3'
miRNA:   3'- uuacaaUCGUGGUGGuugCUGCCGGg -5'
11335 3' -53.2 NC_003084.1 + 63732 0.68 0.858727
Target:  5'- --cGUUuccAGCACCAgCAGCGGauGCCg -3'
miRNA:   3'- uuaCAA---UCGUGGUgGUUGCUgcCGGg -5'
11335 3' -53.2 NC_003084.1 + 48202 0.68 0.858727
Target:  5'- cGGUGgUAGCACCACUccuCGACGcacacCCCa -3'
miRNA:   3'- -UUACaAUCGUGGUGGuu-GCUGCc----GGG- -5'
11335 3' -53.2 NC_003084.1 + 77990 0.68 0.848875
Target:  5'- cAAUGUUgagAGUACCGguCCAACGcuuuuggguaacCGGCCCg -3'
miRNA:   3'- -UUACAA---UCGUGGU--GGUUGCu-----------GCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 34246 0.68 0.842133
Target:  5'- cGUGUUGGCcauugcagguCCACuCGGCGaaGCGGCCg -3'
miRNA:   3'- uUACAAUCGu---------GGUG-GUUGC--UGCCGGg -5'
11335 3' -53.2 NC_003084.1 + 1294 0.68 0.842133
Target:  5'- ------cGCGuCCACCAcucuaGCGugGGCCUg -3'
miRNA:   3'- uuacaauCGU-GGUGGU-----UGCugCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 61003 0.68 0.842133
Target:  5'- -----aAGCACCACCgAACGACcgcuuguaccaGGCUCu -3'
miRNA:   3'- uuacaaUCGUGGUGG-UUGCUG-----------CCGGG- -5'
11335 3' -53.2 NC_003084.1 + 22284 0.68 0.836988
Target:  5'- cGUGcUGGUaaaaacuuuaaccucACCACCAACGuuCGGCCa -3'
miRNA:   3'- uUACaAUCG---------------UGGUGGUUGCu-GCCGGg -5'
11335 3' -53.2 NC_003084.1 + 93986 0.68 0.836988
Target:  5'- --aGUUGGCACCAUCuugugccgcagucCGGCGGUCg -3'
miRNA:   3'- uuaCAAUCGUGGUGGuu-----------GCUGCCGGg -5'
11335 3' -53.2 NC_003084.1 + 46405 0.68 0.833517
Target:  5'- gAAUGUUAcGCACCGCacucuCGAcCGGUCUa -3'
miRNA:   3'- -UUACAAU-CGUGGUGguu--GCU-GCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 7015 0.68 0.833517
Target:  5'- -----cAGCACCACCGuaucccACcACGGUCCa -3'
miRNA:   3'- uuacaaUCGUGGUGGU------UGcUGCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 90608 0.69 0.815687
Target:  5'- -uUG-UAGCACCG--GACGAUGGCUCu -3'
miRNA:   3'- uuACaAUCGUGGUggUUGCUGCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 30401 0.69 0.806492
Target:  5'- cAGUGUgAGUcgagGCCACCAuGCGACGGUg- -3'
miRNA:   3'- -UUACAaUCG----UGGUGGU-UGCUGCCGgg -5'
11335 3' -53.2 NC_003084.1 + 93838 0.69 0.806492
Target:  5'- ----aUAGUGCCGCuCAACuuGACGGCCa -3'
miRNA:   3'- uuacaAUCGUGGUG-GUUG--CUGCCGGg -5'
11335 3' -53.2 NC_003084.1 + 82189 0.69 0.797123
Target:  5'- ---aUUAGCACCGCCAA--ACGGUUCu -3'
miRNA:   3'- uuacAAUCGUGGUGGUUgcUGCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.