miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11335 5' -48.6 NC_003084.1 + 7151 0.66 0.99296
Target:  5'- gUGGA-CCGugGUgggauacgGUGGUGCUGAg- -3'
miRNA:   3'- -ACCUgGGUugUAaa------CACCACGAUUgu -5'
11335 5' -48.6 NC_003084.1 + 9542 0.73 0.82936
Target:  5'- gGGGCUCGGCuacagGUGGUGCU-ACAu -3'
miRNA:   3'- aCCUGGGUUGuaaa-CACCACGAuUGU- -5'
11335 5' -48.6 NC_003084.1 + 17709 0.69 0.971298
Target:  5'- uUGGGCCacguucugAGCGgaaUUGUGGUGCUggUg -3'
miRNA:   3'- -ACCUGGg-------UUGUa--AACACCACGAuuGu -5'
11335 5' -48.6 NC_003084.1 + 28404 0.72 0.894965
Target:  5'- cUGGAuaCCCGugAUccggugguggUUGUGGUGCUGAa- -3'
miRNA:   3'- -ACCU--GGGUugUA----------AACACCACGAUUgu -5'
11335 5' -48.6 NC_003084.1 + 37863 0.72 0.888398
Target:  5'- aUGGAgCCCAACAUUUggcggccccacaaaaGUGGacccguuaaagucgUGCUAACAa -3'
miRNA:   3'- -ACCU-GGGUUGUAAA---------------CACC--------------ACGAUUGU- -5'
11335 5' -48.6 NC_003084.1 + 37930 0.8 0.488431
Target:  5'- gGGGCCC-ACAUUUGcGGUGCUAAa- -3'
miRNA:   3'- aCCUGGGuUGUAAACaCCACGAUUgu -5'
11335 5' -48.6 NC_003084.1 + 49112 0.75 0.771026
Target:  5'- gUGGGgCCGuaGUUgGUGGUGCUAACAu -3'
miRNA:   3'- -ACCUgGGUugUAAaCACCACGAUUGU- -5'
11335 5' -48.6 NC_003084.1 + 49145 0.68 0.974269
Target:  5'- uUGGuACCCGAUcg--GUGGUGUgUGACAa -3'
miRNA:   3'- -ACC-UGGGUUGuaaaCACCACG-AUUGU- -5'
11335 5' -48.6 NC_003084.1 + 49197 0.79 0.520056
Target:  5'- gUGGGgCCGuCGUUgGUGGUGCUAACAu -3'
miRNA:   3'- -ACCUgGGUuGUAAaCACCACGAUUGU- -5'
11335 5' -48.6 NC_003084.1 + 49215 0.74 0.79118
Target:  5'- gUGGACCCucCGUauacGGUGCUAACAu -3'
miRNA:   3'- -ACCUGGGuuGUAaacaCCACGAUUGU- -5'
11335 5' -48.6 NC_003084.1 + 49282 0.75 0.771026
Target:  5'- gUGGGgCCGuaGUUgGUGGUGCUAACAu -3'
miRNA:   3'- -ACCUgGGUugUAAaCACCACGAUUGU- -5'
11335 5' -48.6 NC_003084.1 + 49300 1.1 0.008233
Target:  5'- gUGGACCCAACAUUUGUGGUGCUAACAu -3'
miRNA:   3'- -ACCUGGGUUGUAAACACCACGAUUGU- -5'
11335 5' -48.6 NC_003084.1 + 49367 0.75 0.771026
Target:  5'- gUGGGgCCGuaGUUgGUGGUGCUAGCAu -3'
miRNA:   3'- -ACCUgGGUugUAAaCACCACGAUUGU- -5'
11335 5' -48.6 NC_003084.1 + 49384 1 0.033779
Target:  5'- gUGGACCCAACA-UUGUGGUGCUAACAu -3'
miRNA:   3'- -ACCUGGGUUGUaAACACCACGAUUGU- -5'
11335 5' -48.6 NC_003084.1 + 49469 1.1 0.008233
Target:  5'- gUGGACCCAACAUUUGUGGUGCUAACAu -3'
miRNA:   3'- -ACCUGGGUUGUAAACACCACGAUUGU- -5'
11335 5' -48.6 NC_003084.1 + 49550 0.73 0.838398
Target:  5'- gUGGACCCGAUGUcgGUuGUGCUcACAu -3'
miRNA:   3'- -ACCUGGGUUGUAaaCAcCACGAuUGU- -5'
11335 5' -48.6 NC_003084.1 + 51418 0.67 0.991837
Target:  5'- gUGGGCCCGGguUgaaggUGgaccGGUGCUGcGCAa -3'
miRNA:   3'- -ACCUGGGUUguAa----ACa---CCACGAU-UGU- -5'
11335 5' -48.6 NC_003084.1 + 52113 0.66 0.99296
Target:  5'- gGGACUCAA-----GUGGUGCUAGa- -3'
miRNA:   3'- aCCUGGGUUguaaaCACCACGAUUgu -5'
11335 5' -48.6 NC_003084.1 + 68457 0.67 0.991837
Target:  5'- gUGGACCCGG----UGUcGGUugaGCUAACAu -3'
miRNA:   3'- -ACCUGGGUUguaaACA-CCA---CGAUUGU- -5'
11335 5' -48.6 NC_003084.1 + 68539 1.1 0.008233
Target:  5'- gUGGACCCAACAUUUGUGGUGCUAACAu -3'
miRNA:   3'- -ACCUGGGUUGUAAACACCACGAUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.