Results 41 - 60 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11336 | 3' | -54.2 | NC_003084.1 | + | 6558 | 0.69 | 0.734188 |
Target: 5'- --cGCUAGaucCGCCGCCAcgACccACGGCUCg -3' miRNA: 3'- uuaCGAUC---GUGGUGGU--UGa-UGCCGGG- -5' |
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11336 | 3' | -54.2 | NC_003084.1 | + | 4647 | 0.69 | 0.764607 |
Target: 5'- cAAUGUUggGGUACa---AGCUGCGGCCCa -3' miRNA: 3'- -UUACGA--UCGUGguggUUGAUGCCGGG- -5' |
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11336 | 3' | -54.2 | NC_003084.1 | + | 30401 | 0.69 | 0.713402 |
Target: 5'- gGAUGCgguGCACCuCCAACUcgGGCaCCu -3' miRNA: 3'- -UUACGau-CGUGGuGGUUGAugCCG-GG- -5' |
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11336 | 3' | -54.2 | NC_003084.1 | + | 53017 | 0.69 | 0.723839 |
Target: 5'- --cGC-AGCACCACCuggGCUcGCGGUCg -3' miRNA: 3'- uuaCGaUCGUGGUGGu--UGA-UGCCGGg -5' |
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11336 | 3' | -54.2 | NC_003084.1 | + | 10509 | 0.69 | 0.723839 |
Target: 5'- -cUGCUccaAGCACCccucgGCCAGCUGgagcguguUGGCCUg -3' miRNA: 3'- uuACGA---UCGUGG-----UGGUUGAU--------GCCGGG- -5' |
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11336 | 3' | -54.2 | NC_003084.1 | + | 97763 | 0.69 | 0.74444 |
Target: 5'- --cGCUAcgguccacaucGCACCGCgGAUaACGGUCCa -3' miRNA: 3'- uuaCGAU-----------CGUGGUGgUUGaUGCCGGG- -5' |
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11336 | 3' | -54.2 | NC_003084.1 | + | 93843 | 0.69 | 0.754583 |
Target: 5'- --gGCgaaUAGUGCCGCuCAACUugACGGCCa -3' miRNA: 3'- uuaCG---AUCGUGGUG-GUUGA--UGCCGGg -5' |
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11336 | 3' | -54.2 | NC_003084.1 | + | 104674 | 0.68 | 0.774501 |
Target: 5'- --cGCU-GCACCACCAGCgcCGaGUUCa -3' miRNA: 3'- uuaCGAuCGUGGUGGUUGauGC-CGGG- -5' |
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11336 | 3' | -54.2 | NC_003084.1 | + | 52556 | 0.68 | 0.793856 |
Target: 5'- cGGUGCggacguGCACaccuaucgCAgCAAUUACGGCCCc -3' miRNA: 3'- -UUACGau----CGUG--------GUgGUUGAUGCCGGG- -5' |
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11336 | 3' | -54.2 | NC_003084.1 | + | 64543 | 0.68 | 0.812566 |
Target: 5'- cGUGCUugAGCACCGCUAcCUaACGGUggaCCu -3' miRNA: 3'- uUACGA--UCGUGGUGGUuGA-UGCCG---GG- -5' |
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11336 | 3' | -54.2 | NC_003084.1 | + | 75430 | 0.68 | 0.774501 |
Target: 5'- -uUGUgAGCACCACaaAugUugGGUCCa -3' miRNA: 3'- uuACGaUCGUGGUGg-UugAugCCGGG- -5' |
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11336 | 3' | -54.2 | NC_003084.1 | + | 86491 | 0.68 | 0.783285 |
Target: 5'- cAAUGU--GCAUCACCAcccggaguauguuAUUGCGGUCCg -3' miRNA: 3'- -UUACGauCGUGGUGGU-------------UGAUGCCGGG- -5' |
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11336 | 3' | -54.2 | NC_003084.1 | + | 95343 | 0.67 | 0.856013 |
Target: 5'- --cGCgcacggAGCACCACUGG--ACGGCCg -3' miRNA: 3'- uuaCGa-----UCGUGGUGGUUgaUGCCGGg -5' |
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11336 | 3' | -54.2 | NC_003084.1 | + | 88724 | 0.67 | 0.830552 |
Target: 5'- --cGCUgaAGC-CCAUCAagaugACUAUGGCCUc -3' miRNA: 3'- uuaCGA--UCGuGGUGGU-----UGAUGCCGGG- -5' |
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11336 | 3' | -54.2 | NC_003084.1 | + | 40107 | 0.67 | 0.821654 |
Target: 5'- -uUGC-AGCuCCACCAGCU-C-GCCCg -3' miRNA: 3'- uuACGaUCGuGGUGGUUGAuGcCGGG- -5' |
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11336 | 3' | -54.2 | NC_003084.1 | + | 20825 | 0.67 | 0.836662 |
Target: 5'- cAUGCaAGCGCaacggcacgcaaacuCCAGCgcccaGCGGCCCa -3' miRNA: 3'- uUACGaUCGUGgu-------------GGUUGa----UGCCGGG- -5' |
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11336 | 3' | -54.2 | NC_003084.1 | + | 6907 | 0.67 | 0.856013 |
Target: 5'- --cGagaUGGaCugCGCCAACUgGCGGCCa -3' miRNA: 3'- uuaCg--AUC-GugGUGGUUGA-UGCCGGg -5' |
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11336 | 3' | -54.2 | NC_003084.1 | + | 61048 | 0.67 | 0.830552 |
Target: 5'- cGAUGC-AGU-CCACCAACUcuucgggcACgaGGCCCg -3' miRNA: 3'- -UUACGaUCGuGGUGGUUGA--------UG--CCGGG- -5' |
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11336 | 3' | -54.2 | NC_003084.1 | + | 65414 | 0.67 | 0.83925 |
Target: 5'- cGAUGCU-GCaaGCCGCCGcaaUACGGUUCg -3' miRNA: 3'- -UUACGAuCG--UGGUGGUug-AUGCCGGG- -5' |
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11336 | 3' | -54.2 | NC_003084.1 | + | 105480 | 0.67 | 0.821654 |
Target: 5'- --cGCgaauuGuCACCGCaCGACUugGGCuCCa -3' miRNA: 3'- uuaCGau---C-GUGGUG-GUUGAugCCG-GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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