miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11336 3' -54.2 NC_003084.1 + 68682 0.95 0.020003
Target:  5'- cAGUGUUAGCACCACCGACaACGGCCCc -3'
miRNA:   3'- -UUACGAUCGUGGUGGUUGaUGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 68675 0.78 0.284692
Target:  5'- aAAUGUUAGCACCACaaAugUugGGUCCa -3'
miRNA:   3'- -UUACGAUCGUGGUGg-UugAugCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 68571 0.84 0.119796
Target:  5'- --aGCUAGCACCACaAACaACGGCCCc -3'
miRNA:   3'- uuaCGAUCGUGGUGgUUGaUGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 68507 0.93 0.029123
Target:  5'- -cUGUUAGCACCACCAACgACGGCCCc -3'
miRNA:   3'- uuACGAUCGUGGUGGUUGaUGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 68425 1 0.00913
Target:  5'- -uUGUUGGCACCACCGACUACGGCCCc -3'
miRNA:   3'- uuACGAUCGUGGUGGUUGAUGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 68293 0.66 0.864063
Target:  5'- cGAUGaaguGCACCACCAAC--CGGuuCCCa -3'
miRNA:   3'- -UUACgau-CGUGGUGGUUGauGCC--GGG- -5'
11336 3' -54.2 NC_003084.1 + 65414 0.67 0.83925
Target:  5'- cGAUGCU-GCaaGCCGCCGcaaUACGGUUCg -3'
miRNA:   3'- -UUACGAuCG--UGGUGGUug-AUGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 65180 0.66 0.879463
Target:  5'- --cGCUagAGCGCCgguCAGCUgcACGGCCa -3'
miRNA:   3'- uuaCGA--UCGUGGug-GUUGA--UGCCGGg -5'
11336 3' -54.2 NC_003084.1 + 64543 0.68 0.812566
Target:  5'- cGUGCUugAGCACCGCUAcCUaACGGUggaCCu -3'
miRNA:   3'- uUACGA--UCGUGGUGGUuGA-UGCCG---GG- -5'
11336 3' -54.2 NC_003084.1 + 61048 0.67 0.830552
Target:  5'- cGAUGC-AGU-CCACCAACUcuucgggcACgaGGCCCg -3'
miRNA:   3'- -UUACGaUCGuGGUGGUUGA--------UG--CCGGG- -5'
11336 3' -54.2 NC_003084.1 + 53117 0.7 0.670994
Target:  5'- cGGUGCUaccaccauuuauAGCACCACCGuACUGCGcagugcacCCCa -3'
miRNA:   3'- -UUACGA------------UCGUGGUGGU-UGAUGCc-------GGG- -5'
11336 3' -54.2 NC_003084.1 + 53017 0.69 0.723839
Target:  5'- --cGC-AGCACCACCuggGCUcGCGGUCg -3'
miRNA:   3'- uuaCGaUCGUGGUGGu--UGA-UGCCGGg -5'
11336 3' -54.2 NC_003084.1 + 52556 0.68 0.793856
Target:  5'- cGGUGCggacguGCACaccuaucgCAgCAAUUACGGCCCc -3'
miRNA:   3'- -UUACGau----CGUG--------GUgGUUGAUGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 51463 0.72 0.574444
Target:  5'- --aGCUcacAGCACCGguccaccuUCAACcACGGCCCa -3'
miRNA:   3'- uuaCGA---UCGUGGU--------GGUUGaUGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 49673 0.82 0.165784
Target:  5'- aAAUGUUGGCACCACCAccccagcucaccGgUACGGCUCa -3'
miRNA:   3'- -UUACGAUCGUGGUGGU------------UgAUGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 49584 0.88 0.061276
Target:  5'- gAAUGCUAGCACgACUAACgACGGCCCc -3'
miRNA:   3'- -UUACGAUCGUGgUGGUUGaUGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 49503 1.09 0.002456
Target:  5'- aAAUGCUAGCACCACCAACUACGGCCCc -3'
miRNA:   3'- -UUACGAUCGUGGUGGUUGAUGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 49418 1.04 0.00495
Target:  5'- aAAUGUUAGCACCACCAACUACGGCCCc -3'
miRNA:   3'- -UUACGAUCGUGGUGGUUGAUGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 49334 0.96 0.018338
Target:  5'- aAAUGUUAGCACCACCAACgACGGCCCc -3'
miRNA:   3'- -UUACGAUCGUGGUGGUUGaUGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 49333 0.78 0.284692
Target:  5'- aAAUGUUAGCACCACaaAugUugGGUCCa -3'
miRNA:   3'- -UUACGAUCGUGGUGg-UugAugCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.