miRNA display CGI


Results 41 - 60 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11336 3' -54.2 NC_003084.1 + 53117 0.7 0.670994
Target:  5'- cGGUGCUaccaccauuuauAGCACCACCGuACUGCGcagugcacCCCa -3'
miRNA:   3'- -UUACGA------------UCGUGGUGGU-UGAUGCc-------GGG- -5'
11336 3' -54.2 NC_003084.1 + 37710 0.7 0.670994
Target:  5'- cGGUGC-AGUACCACCA--UACGaGCCUc -3'
miRNA:   3'- -UUACGaUCGUGGUGGUugAUGC-CGGG- -5'
11336 3' -54.2 NC_003084.1 + 35373 0.7 0.702888
Target:  5'- cAUGCUcaaguGGUGCUACCAcCUcGCGGUCCa -3'
miRNA:   3'- uUACGA-----UCGUGGUGGUuGA-UGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 30401 0.69 0.713402
Target:  5'- gGAUGCgguGCACCuCCAACUcgGGCaCCu -3'
miRNA:   3'- -UUACGau-CGUGGuGGUUGAugCCG-GG- -5'
11336 3' -54.2 NC_003084.1 + 53017 0.69 0.723839
Target:  5'- --cGC-AGCACCACCuggGCUcGCGGUCg -3'
miRNA:   3'- uuaCGaUCGUGGUGGu--UGA-UGCCGGg -5'
11336 3' -54.2 NC_003084.1 + 10509 0.69 0.723839
Target:  5'- -cUGCUccaAGCACCccucgGCCAGCUGgagcguguUGGCCUg -3'
miRNA:   3'- uuACGA---UCGUGG-----UGGUUGAU--------GCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 97763 0.69 0.74444
Target:  5'- --cGCUAcgguccacaucGCACCGCgGAUaACGGUCCa -3'
miRNA:   3'- uuaCGAU-----------CGUGGUGgUUGaUGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 51463 0.72 0.574444
Target:  5'- --aGCUcacAGCACCGguccaccuUCAACcACGGCCCa -3'
miRNA:   3'- uuaCGA---UCGUGGU--------GGUUGaUGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 68737 0.72 0.553273
Target:  5'- uGUGUUAGCACgACCGAC-ACcgGGUCCa -3'
miRNA:   3'- uUACGAUCGUGgUGGUUGaUG--CCGGG- -5'
11336 3' -54.2 NC_003084.1 + 39108 0.72 0.539636
Target:  5'- ---uCUGGCAgCACCGAUucaccccgagcucgUGCGGCCCg -3'
miRNA:   3'- uuacGAUCGUgGUGGUUG--------------AUGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 49418 1.04 0.00495
Target:  5'- aAAUGUUAGCACCACCAACUACGGCCCc -3'
miRNA:   3'- -UUACGAUCGUGGUGGUUGAUGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 49249 1.04 0.00495
Target:  5'- aAAUGUUAGCACCACCAACUACGGCCCc -3'
miRNA:   3'- -UUACGAUCGUGGUGGUUGAUGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 49334 0.96 0.018338
Target:  5'- aAAUGUUAGCACCACCAACgACGGCCCc -3'
miRNA:   3'- -UUACGAUCGUGGUGGUUGaUGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 49584 0.88 0.061276
Target:  5'- gAAUGCUAGCACgACUAACgACGGCCCc -3'
miRNA:   3'- -UUACGAUCGUGgUGGUUGaUGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 49673 0.82 0.165784
Target:  5'- aAAUGUUGGCACCACCAccccagcucaccGgUACGGCUCa -3'
miRNA:   3'- -UUACGAUCGUGGUGGU------------UgAUGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 68675 0.78 0.284692
Target:  5'- aAAUGUUAGCACCACaaAugUugGGUCCa -3'
miRNA:   3'- -UUACGAUCGUGGUGg-UugAugCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 31946 0.77 0.313832
Target:  5'- --gGUUGGCACCACCGcggGCU-CGGCCg -3'
miRNA:   3'- uuaCGAUCGUGGUGGU---UGAuGCCGGg -5'
11336 3' -54.2 NC_003084.1 + 22284 0.77 0.332372
Target:  5'- cGUGCUGGUaaaaacuuuaaccucACCACCAACguuCGGCCa -3'
miRNA:   3'- uUACGAUCG---------------UGGUGGUUGau-GCCGGg -5'
11336 3' -54.2 NC_003084.1 + 26933 0.75 0.405239
Target:  5'- --aGCUGGUuuCCGugguCCAGCUACGGUCCg -3'
miRNA:   3'- uuaCGAUCGu-GGU----GGUUGAUGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 25494 0.73 0.481388
Target:  5'- -uUGCgauacAGCugUACCAACgcacCGGCCCg -3'
miRNA:   3'- uuACGa----UCGugGUGGUUGau--GCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.