miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11336 3' -54.2 NC_003084.1 + 82201 0.7 0.660279
Target:  5'- cGGUGCaucaaaauUAGCACCGCCAA--ACGGUUCu -3'
miRNA:   3'- -UUACG--------AUCGUGGUGGUUgaUGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 22284 0.77 0.332372
Target:  5'- cGUGCUGGUaaaaacuuuaaccucACCACCAACguuCGGCCa -3'
miRNA:   3'- uUACGAUCG---------------UGGUGGUUGau-GCCGGg -5'
11336 3' -54.2 NC_003084.1 + 107037 0.66 0.867219
Target:  5'- --aGC-AGCACCACUggUUGCucaacugcaccgcagGGCCUa -3'
miRNA:   3'- uuaCGaUCGUGGUGGuuGAUG---------------CCGGG- -5'
11336 3' -54.2 NC_003084.1 + 52556 0.68 0.793856
Target:  5'- cGGUGCggacguGCACaccuaucgCAgCAAUUACGGCCCc -3'
miRNA:   3'- -UUACGau----CGUG--------GUgGUUGAUGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 37710 0.7 0.670994
Target:  5'- cGGUGC-AGUACCACCA--UACGaGCCUc -3'
miRNA:   3'- -UUACGaUCGUGGUGGUugAUGC-CGGG- -5'
11336 3' -54.2 NC_003084.1 + 31946 0.77 0.313832
Target:  5'- --gGUUGGCACCACCGcggGCU-CGGCCg -3'
miRNA:   3'- uuaCGAUCGUGGUGGU---UGAuGCCGGg -5'
11336 3' -54.2 NC_003084.1 + 4647 0.69 0.764607
Target:  5'- cAAUGUUggGGUACa---AGCUGCGGCCCa -3'
miRNA:   3'- -UUACGA--UCGUGguggUUGAUGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 68675 0.78 0.284692
Target:  5'- aAAUGUUAGCACCACaaAugUugGGUCCa -3'
miRNA:   3'- -UUACGAUCGUGGUGg-UugAugCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 49673 0.82 0.165784
Target:  5'- aAAUGUUGGCACCACCAccccagcucaccGgUACGGCUCa -3'
miRNA:   3'- -UUACGAUCGUGGUGGU------------UgAUGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 35373 0.7 0.702888
Target:  5'- cAUGCUcaaguGGUGCUACCAcCUcGCGGUCCa -3'
miRNA:   3'- uUACGA-----UCGUGGUGGUuGA-UGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 97220 0.66 0.89389
Target:  5'- -cUGCUcGGcCAUCACCAAau-CGGCCa -3'
miRNA:   3'- uuACGA-UC-GUGGUGGUUgauGCCGGg -5'
11336 3' -54.2 NC_003084.1 + 36202 0.7 0.670994
Target:  5'- --aGCcccGCACCGCCAACUgGUGGUCCa -3'
miRNA:   3'- uuaCGau-CGUGGUGGUUGA-UGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 10509 0.69 0.723839
Target:  5'- -cUGCUccaAGCACCccucgGCCAGCUGgagcguguUGGCCUg -3'
miRNA:   3'- uuACGA---UCGUGG-----UGGUUGAU--------GCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 64543 0.68 0.812566
Target:  5'- cGUGCUugAGCACCGCUAcCUaACGGUggaCCu -3'
miRNA:   3'- uUACGA--UCGUGGUGGUuGA-UGCCG---GG- -5'
11336 3' -54.2 NC_003084.1 + 65414 0.67 0.83925
Target:  5'- cGAUGCU-GCaaGCCGCCGcaaUACGGUUCg -3'
miRNA:   3'- -UUACGAuCG--UGGUGGUug-AUGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 68737 0.72 0.553273
Target:  5'- uGUGUUAGCACgACCGAC-ACcgGGUCCa -3'
miRNA:   3'- uUACGAUCGUGgUGGUUGaUG--CCGGG- -5'
11336 3' -54.2 NC_003084.1 + 26933 0.75 0.405239
Target:  5'- --aGCUGGUuuCCGugguCCAGCUACGGUCCg -3'
miRNA:   3'- uuaCGAUCGu-GGU----GGUUGAUGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 2528 0.7 0.702888
Target:  5'- --cGCUAGCAgCACCcACUacACGGUaaCCg -3'
miRNA:   3'- uuaCGAUCGUgGUGGuUGA--UGCCG--GG- -5'
11336 3' -54.2 NC_003084.1 + 104762 0.66 0.871882
Target:  5'- --aGCagcGCACCACCAcaucCUcCGGUCCa -3'
miRNA:   3'- uuaCGau-CGUGGUGGUu---GAuGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 37437 0.66 0.871882
Target:  5'- cGAUGUUGGUACCACUauacuggaGACUuuGGCaCUg -3'
miRNA:   3'- -UUACGAUCGUGGUGG--------UUGAugCCG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.