Results 61 - 73 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11336 | 3' | -54.2 | NC_003084.1 | + | 65180 | 0.66 | 0.879463 |
Target: 5'- --cGCUagAGCGCCgguCAGCUgcACGGCCa -3' miRNA: 3'- uuaCGA--UCGUGGug-GUUGA--UGCCGGg -5' |
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11336 | 3' | -54.2 | NC_003084.1 | + | 104762 | 0.66 | 0.871882 |
Target: 5'- --aGCagcGCACCACCAcaucCUcCGGUCCa -3' miRNA: 3'- uuaCGau-CGUGGUGGUu---GAuGCCGGG- -5' |
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11336 | 3' | -54.2 | NC_003084.1 | + | 37437 | 0.66 | 0.871882 |
Target: 5'- cGAUGUUGGUACCACUauacuggaGACUuuGGCaCUg -3' miRNA: 3'- -UUACGAUCGUGGUGG--------UUGAugCCG-GG- -5' |
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11336 | 3' | -54.2 | NC_003084.1 | + | 95343 | 0.67 | 0.856013 |
Target: 5'- --cGCgcacggAGCACCACUGG--ACGGCCg -3' miRNA: 3'- uuaCGa-----UCGUGGUGGUUgaUGCCGGg -5' |
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11336 | 3' | -54.2 | NC_003084.1 | + | 68293 | 0.66 | 0.864063 |
Target: 5'- cGAUGaaguGCACCACCAAC--CGGuuCCCa -3' miRNA: 3'- -UUACgau-CGUGGUGGUUGauGCC--GGG- -5' |
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11336 | 3' | -54.2 | NC_003084.1 | + | 61048 | 0.67 | 0.830552 |
Target: 5'- cGAUGC-AGU-CCACCAACUcuucgggcACgaGGCCCg -3' miRNA: 3'- -UUACGaUCGuGGUGGUUGA--------UG--CCGGG- -5' |
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11336 | 3' | -54.2 | NC_003084.1 | + | 88724 | 0.67 | 0.830552 |
Target: 5'- --cGCUgaAGC-CCAUCAagaugACUAUGGCCUc -3' miRNA: 3'- uuaCGA--UCGuGGUGGU-----UGAUGCCGGG- -5' |
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11336 | 3' | -54.2 | NC_003084.1 | + | 105480 | 0.67 | 0.821654 |
Target: 5'- --cGCgaauuGuCACCGCaCGACUugGGCuCCa -3' miRNA: 3'- uuaCGau---C-GUGGUG-GUUGAugCCG-GG- -5' |
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11336 | 3' | -54.2 | NC_003084.1 | + | 86491 | 0.68 | 0.783285 |
Target: 5'- cAAUGU--GCAUCACCAcccggaguauguuAUUGCGGUCCg -3' miRNA: 3'- -UUACGauCGUGGUGGU-------------UGAUGCCGGG- -5' |
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11336 | 3' | -54.2 | NC_003084.1 | + | 104674 | 0.68 | 0.774501 |
Target: 5'- --cGCU-GCACCACCAGCgcCGaGUUCa -3' miRNA: 3'- uuaCGAuCGUGGUGGUUGauGC-CGGG- -5' |
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11336 | 3' | -54.2 | NC_003084.1 | + | 75430 | 0.68 | 0.774501 |
Target: 5'- -uUGUgAGCACCACaaAugUugGGUCCa -3' miRNA: 3'- uuACGaUCGUGGUGg-UugAugCCGGG- -5' |
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11336 | 3' | -54.2 | NC_003084.1 | + | 91207 | 0.69 | 0.764607 |
Target: 5'- cGGUGC-AGCuau-CCAACcACGGCCCg -3' miRNA: 3'- -UUACGaUCGugguGGUUGaUGCCGGG- -5' |
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11336 | 3' | -54.2 | NC_003084.1 | + | 68425 | 1 | 0.00913 |
Target: 5'- -uUGUUGGCACCACCGACUACGGCCCc -3' miRNA: 3'- uuACGAUCGUGGUGGUUGAUGCCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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