miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11336 3' -54.2 NC_003084.1 + 105480 0.67 0.821654
Target:  5'- --cGCgaauuGuCACCGCaCGACUugGGCuCCa -3'
miRNA:   3'- uuaCGau---C-GUGGUG-GUUGAugCCG-GG- -5'
11336 3' -54.2 NC_003084.1 + 64543 0.68 0.812566
Target:  5'- cGUGCUugAGCACCGCUAcCUaACGGUggaCCu -3'
miRNA:   3'- uUACGA--UCGUGGUGGUuGA-UGCCG---GG- -5'
11336 3' -54.2 NC_003084.1 + 52556 0.68 0.793856
Target:  5'- cGGUGCggacguGCACaccuaucgCAgCAAUUACGGCCCc -3'
miRNA:   3'- -UUACGau----CGUG--------GUgGUUGAUGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 86491 0.68 0.783285
Target:  5'- cAAUGU--GCAUCACCAcccggaguauguuAUUGCGGUCCg -3'
miRNA:   3'- -UUACGauCGUGGUGGU-------------UGAUGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 104674 0.68 0.774501
Target:  5'- --cGCU-GCACCACCAGCgcCGaGUUCa -3'
miRNA:   3'- uuaCGAuCGUGGUGGUUGauGC-CGGG- -5'
11336 3' -54.2 NC_003084.1 + 75430 0.68 0.774501
Target:  5'- -uUGUgAGCACCACaaAugUugGGUCCa -3'
miRNA:   3'- uuACGaUCGUGGUGg-UugAugCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 4647 0.69 0.764607
Target:  5'- cAAUGUUggGGUACa---AGCUGCGGCCCa -3'
miRNA:   3'- -UUACGA--UCGUGguggUUGAUGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 91207 0.69 0.764607
Target:  5'- cGGUGC-AGCuau-CCAACcACGGCCCg -3'
miRNA:   3'- -UUACGaUCGugguGGUUGaUGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 93843 0.69 0.754583
Target:  5'- --gGCgaaUAGUGCCGCuCAACUugACGGCCa -3'
miRNA:   3'- uuaCG---AUCGUGGUG-GUUGA--UGCCGGg -5'
11336 3' -54.2 NC_003084.1 + 8466 0.69 0.74444
Target:  5'- uGGUGCUAGCACCGCaGAUUcCGcGCUa -3'
miRNA:   3'- -UUACGAUCGUGGUGgUUGAuGC-CGGg -5'
11336 3' -54.2 NC_003084.1 + 97763 0.69 0.74444
Target:  5'- --cGCUAcgguccacaucGCACCGCgGAUaACGGUCCa -3'
miRNA:   3'- uuaCGAU-----------CGUGGUGgUUGaUGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 46468 0.69 0.74444
Target:  5'- uGGUGCgcgaauacAGC-UCGCCAACUG-GGCCCg -3'
miRNA:   3'- -UUACGa-------UCGuGGUGGUUGAUgCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 6558 0.69 0.734188
Target:  5'- --cGCUAGaucCGCCGCCAcgACccACGGCUCg -3'
miRNA:   3'- uuaCGAUC---GUGGUGGU--UGa-UGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 35242 0.69 0.734188
Target:  5'- aGGUGgUAGCACCACuugagCAugUGCGGUgucaCCg -3'
miRNA:   3'- -UUACgAUCGUGGUG-----GUugAUGCCG----GG- -5'
11336 3' -54.2 NC_003084.1 + 10509 0.69 0.723839
Target:  5'- -cUGCUccaAGCACCccucgGCCAGCUGgagcguguUGGCCUg -3'
miRNA:   3'- uuACGA---UCGUGG-----UGGUUGAU--------GCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 53017 0.69 0.723839
Target:  5'- --cGC-AGCACCACCuggGCUcGCGGUCg -3'
miRNA:   3'- uuaCGaUCGUGGUGGu--UGA-UGCCGGg -5'
11336 3' -54.2 NC_003084.1 + 30401 0.69 0.713402
Target:  5'- gGAUGCgguGCACCuCCAACUcgGGCaCCu -3'
miRNA:   3'- -UUACGau-CGUGGuGGUUGAugCCG-GG- -5'
11336 3' -54.2 NC_003084.1 + 2528 0.7 0.702888
Target:  5'- --cGCUAGCAgCACCcACUacACGGUaaCCg -3'
miRNA:   3'- uuaCGAUCGUgGUGGuUGA--UGCCG--GG- -5'
11336 3' -54.2 NC_003084.1 + 35373 0.7 0.702888
Target:  5'- cAUGCUcaaguGGUGCUACCAcCUcGCGGUCCa -3'
miRNA:   3'- uUACGA-----UCGUGGUGGUuGA-UGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 4522 0.7 0.692308
Target:  5'- --aGCUuGUACC-CCAACauUGCGGCCa -3'
miRNA:   3'- uuaCGAuCGUGGuGGUUG--AUGCCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.