miRNA display CGI


Results 21 - 37 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11336 5' -48.6 NC_003084.1 + 68559 0.66 0.996284
Target:  5'- gUGGGgCCGuaGUcgGUGGUGCcAACAa -3'
miRNA:   3'- -ACCUgGGUugUAaaCACCACGaUUGU- -5'
11336 5' -48.6 NC_003084.1 + 68602 0.77 0.663332
Target:  5'- gUGGACCCggUGUcgGUcGUGCUAACAc -3'
miRNA:   3'- -ACCUGGGuuGUAaaCAcCACGAUUGU- -5'
11336 5' -48.6 NC_003084.1 + 68641 0.8 0.498876
Target:  5'- gUGGGgCCGuCGUUgGUGGUGCUAACAg -3'
miRNA:   3'- -ACCUgGGUuGUAAaCACCACGAUUGU- -5'
11336 5' -48.6 NC_003084.1 + 68704 0.82 0.399643
Target:  5'- gUGGGgCCGuuGUUUGUGGUGCUAGCu -3'
miRNA:   3'- -ACCUgGGUugUAAACACCACGAUUGu -5'
11336 5' -48.6 NC_003084.1 + 68718 0.78 0.596514
Target:  5'- -uGACCCGACAUUUGUuGUGCUcACAu -3'
miRNA:   3'- acCUGGGUUGUAAACAcCACGAuUGU- -5'
11336 5' -48.6 NC_003084.1 + 68818 0.76 0.696478
Target:  5'- gUGGGgCCGuuGUcgGUGGUGCUAACAc -3'
miRNA:   3'- -ACCUgGGUugUAaaCACCACGAUUGU- -5'
11336 5' -48.6 NC_003084.1 + 68843 0.74 0.820109
Target:  5'- --cACCCGACAUgaGUGGUGCU-ACAu -3'
miRNA:   3'- accUGGGUUGUAaaCACCACGAuUGU- -5'
11336 5' -48.6 NC_003084.1 + 68942 0.77 0.618766
Target:  5'- gUGGGgCCGAUAacgGUGGUGCUAGCu -3'
miRNA:   3'- -ACCUgGGUUGUaaaCACCACGAUUGu -5'
11336 5' -48.6 NC_003084.1 + 70285 0.66 0.996284
Target:  5'- gUGGGcCCCGACAUggUGaccaUGGUGCg---- -3'
miRNA:   3'- -ACCU-GGGUUGUAa-AC----ACCACGauugu -5'
11336 5' -48.6 NC_003084.1 + 74883 0.67 0.987601
Target:  5'- cGGGgCCAugGUaccaaucgugUUGUGGUGCgUAAUg -3'
miRNA:   3'- aCCUgGGUugUA----------AACACCACG-AUUGu -5'
11336 5' -48.6 NC_003084.1 + 75564 1.02 0.025057
Target:  5'- gUGGACCCAACAUUUGUGGUGCUcACAa -3'
miRNA:   3'- -ACCUGGGUUGUAAACACCACGAuUGU- -5'
11336 5' -48.6 NC_003084.1 + 77651 0.68 0.979289
Target:  5'- -uGACCgAAUAUcgaaaccgccacaUUGUGGUGCUAugGu -3'
miRNA:   3'- acCUGGgUUGUA-------------AACACCACGAUugU- -5'
11336 5' -48.6 NC_003084.1 + 79736 0.68 0.98184
Target:  5'- gGGAUCCGAagcugagGUGGUGCUcuCGa -3'
miRNA:   3'- aCCUGGGUUguaaa--CACCACGAuuGU- -5'
11336 5' -48.6 NC_003084.1 + 85684 0.67 0.989168
Target:  5'- aGGGCCC-GCGag-GUGGUGCa---- -3'
miRNA:   3'- aCCUGGGuUGUaaaCACCACGauugu -5'
11336 5' -48.6 NC_003084.1 + 91228 0.67 0.990577
Target:  5'- cGGACaCCAACG--UGUGGccCUGGCGc -3'
miRNA:   3'- aCCUG-GGUUGUaaACACCacGAUUGU- -5'
11336 5' -48.6 NC_003084.1 + 91553 0.66 0.994835
Target:  5'- uUGG-CCUcGCAgUUGUGGUGUUGGg- -3'
miRNA:   3'- -ACCuGGGuUGUaAACACCACGAUUgu -5'
11336 5' -48.6 NC_003084.1 + 102847 0.71 0.927361
Target:  5'- cUGGGCCuggaCAACGUUUuUGGUGCUGuCGg -3'
miRNA:   3'- -ACCUGG----GUUGUAAAcACCACGAUuGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.