miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11336 5' -48.6 NC_003084.1 + 68539 1.1 0.008233
Target:  5'- gUGGACCCAACAUUUGUGGUGCUAACAu -3'
miRNA:   3'- -ACCUGGGUUGUAAACACCACGAUUGU- -5'
11336 5' -48.6 NC_003084.1 + 17709 0.69 0.971298
Target:  5'- uUGGGCCacguucugAGCGgaaUUGUGGUGCUggUg -3'
miRNA:   3'- -ACCUGGg-------UUGUa--AACACCACGAuuGu -5'
11336 5' -48.6 NC_003084.1 + 77651 0.68 0.979289
Target:  5'- -uGACCgAAUAUcgaaaccgccacaUUGUGGUGCUAugGu -3'
miRNA:   3'- acCUGGgUUGUA-------------AACACCACGAUugU- -5'
11336 5' -48.6 NC_003084.1 + 79736 0.68 0.98184
Target:  5'- gGGAUCCGAagcugagGUGGUGCUcuCGa -3'
miRNA:   3'- aCCUGGGUUguaaa--CACCACGAuuGU- -5'
11336 5' -48.6 NC_003084.1 + 74883 0.67 0.987601
Target:  5'- cGGGgCCAugGUaccaaucgugUUGUGGUGCgUAAUg -3'
miRNA:   3'- aCCUgGGUugUA----------AACACCACG-AUUGu -5'
11336 5' -48.6 NC_003084.1 + 51418 0.67 0.991837
Target:  5'- gUGGGCCCGGguUgaaggUGgaccGGUGCUGcGCAa -3'
miRNA:   3'- -ACCUGGGUUguAa----ACa---CCACGAU-UGU- -5'
11336 5' -48.6 NC_003084.1 + 68457 0.67 0.991837
Target:  5'- gUGGACCCGG----UGUcGGUugaGCUAACAu -3'
miRNA:   3'- -ACCUGGGUUguaaACA-CCA---CGAUUGU- -5'
11336 5' -48.6 NC_003084.1 + 52113 0.66 0.99296
Target:  5'- gGGACUCAA-----GUGGUGCUAGa- -3'
miRNA:   3'- aCCUGGGUUguaaaCACCACGAUUgu -5'
11336 5' -48.6 NC_003084.1 + 91553 0.66 0.994835
Target:  5'- uUGG-CCUcGCAgUUGUGGUGUUGGg- -3'
miRNA:   3'- -ACCuGGGuUGUaAACACCACGAUUgu -5'
11336 5' -48.6 NC_003084.1 + 102847 0.71 0.927361
Target:  5'- cUGGGCCuggaCAACGUUUuUGGUGCUGuCGg -3'
miRNA:   3'- -ACCUGG----GUUGUAAAcACCACGAUuGU- -5'
11336 5' -48.6 NC_003084.1 + 28404 0.72 0.894965
Target:  5'- cUGGAuaCCCGugAUccggugguggUUGUGGUGCUGAa- -3'
miRNA:   3'- -ACCU--GGGUugUA----------AACACCACGAUUgu -5'
11336 5' -48.6 NC_003084.1 + 49197 0.79 0.520056
Target:  5'- gUGGGgCCGuCGUUgGUGGUGCUAACAu -3'
miRNA:   3'- -ACCUgGGUuGUAAaCACCACGAUUGU- -5'
11336 5' -48.6 NC_003084.1 + 68718 0.78 0.596514
Target:  5'- -uGACCCGACAUUUGUuGUGCUcACAu -3'
miRNA:   3'- acCUGGGUUGUAAACAcCACGAuUGU- -5'
11336 5' -48.6 NC_003084.1 + 68602 0.77 0.663332
Target:  5'- gUGGACCCggUGUcgGUcGUGCUAACAc -3'
miRNA:   3'- -ACCUGGGuuGUAaaCAcCACGAUUGU- -5'
11336 5' -48.6 NC_003084.1 + 49112 0.75 0.771026
Target:  5'- gUGGGgCCGuaGUUgGUGGUGCUAACAu -3'
miRNA:   3'- -ACCUgGGUugUAAaCACCACGAUUGU- -5'
11336 5' -48.6 NC_003084.1 + 49282 0.75 0.771026
Target:  5'- gUGGGgCCGuaGUUgGUGGUGCUAACAu -3'
miRNA:   3'- -ACCUgGGUugUAAaCACCACGAUUGU- -5'
11336 5' -48.6 NC_003084.1 + 49367 0.75 0.771026
Target:  5'- gUGGGgCCGuaGUUgGUGGUGCUAGCAu -3'
miRNA:   3'- -ACCUgGGUugUAAaCACCACGAUUGU- -5'
11336 5' -48.6 NC_003084.1 + 68843 0.74 0.820109
Target:  5'- --cACCCGACAUgaGUGGUGCU-ACAu -3'
miRNA:   3'- accUGGGUUGUAaaCACCACGAuUGU- -5'
11336 5' -48.6 NC_003084.1 + 37863 0.72 0.888398
Target:  5'- aUGGAgCCCAACAUUUggcggccccacaaaaGUGGacccguuaaagucgUGCUAACAa -3'
miRNA:   3'- -ACCU-GGGUUGUAAA---------------CACC--------------ACGAUUGU- -5'
11336 5' -48.6 NC_003084.1 + 68559 0.66 0.996284
Target:  5'- gUGGGgCCGuaGUcgGUGGUGCcAACAa -3'
miRNA:   3'- -ACCUgGGUugUAaaCACCACGaUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.