miRNA display CGI


Results 21 - 37 of 37 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11336 5' -48.6 NC_003084.1 + 49215 0.74 0.79118
Target:  5'- gUGGACCCucCGUauacGGUGCUAACAu -3'
miRNA:   3'- -ACCUGGGuuGUAaacaCCACGAUUGU- -5'
11336 5' -48.6 NC_003084.1 + 49112 0.75 0.771026
Target:  5'- gUGGGgCCGuaGUUgGUGGUGCUAACAu -3'
miRNA:   3'- -ACCUgGGUugUAAaCACCACGAUUGU- -5'
11336 5' -48.6 NC_003084.1 + 49282 0.75 0.771026
Target:  5'- gUGGGgCCGuaGUUgGUGGUGCUAACAu -3'
miRNA:   3'- -ACCUgGGUugUAAaCACCACGAUUGU- -5'
11336 5' -48.6 NC_003084.1 + 49367 0.75 0.771026
Target:  5'- gUGGGgCCGuaGUUgGUGGUGCUAGCAu -3'
miRNA:   3'- -ACCUgGGUugUAAaCACCACGAUUGU- -5'
11336 5' -48.6 NC_003084.1 + 68818 0.76 0.696478
Target:  5'- gUGGGgCCGuuGUcgGUGGUGCUAACAc -3'
miRNA:   3'- -ACCUgGGUugUAaaCACCACGAUUGU- -5'
11336 5' -48.6 NC_003084.1 + 68602 0.77 0.663332
Target:  5'- gUGGACCCggUGUcgGUcGUGCUAACAc -3'
miRNA:   3'- -ACCUGGGuuGUAaaCAcCACGAUUGU- -5'
11336 5' -48.6 NC_003084.1 + 68942 0.77 0.618766
Target:  5'- gUGGGgCCGAUAacgGUGGUGCUAGCu -3'
miRNA:   3'- -ACCUgGGUUGUaaaCACCACGAUUGu -5'
11336 5' -48.6 NC_003084.1 + 68718 0.78 0.596514
Target:  5'- -uGACCCGACAUUUGUuGUGCUcACAu -3'
miRNA:   3'- acCUGGGUUGUAAACAcCACGAuUGU- -5'
11336 5' -48.6 NC_003084.1 + 49197 0.79 0.520056
Target:  5'- gUGGGgCCGuCGUUgGUGGUGCUAACAu -3'
miRNA:   3'- -ACCUgGGUuGUAAaCACCACGAUUGU- -5'
11336 5' -48.6 NC_003084.1 + 68641 0.8 0.498876
Target:  5'- gUGGGgCCGuCGUUgGUGGUGCUAACAg -3'
miRNA:   3'- -ACCUgGGUuGUAAaCACCACGAUUGU- -5'
11336 5' -48.6 NC_003084.1 + 37930 0.8 0.488431
Target:  5'- gGGGCCC-ACAUUUGcGGUGCUAAa- -3'
miRNA:   3'- aCCUGGGuUGUAAACaCCACGAUUgu -5'
11336 5' -48.6 NC_003084.1 + 68704 0.82 0.399643
Target:  5'- gUGGGgCCGuuGUUUGUGGUGCUAGCu -3'
miRNA:   3'- -ACCUgGGUugUAAACACCACGAUUGu -5'
11336 5' -48.6 NC_003084.1 + 49384 1 0.033779
Target:  5'- gUGGACCCAACA-UUGUGGUGCUAACAu -3'
miRNA:   3'- -ACCUGGGUUGUaAACACCACGAUUGU- -5'
11336 5' -48.6 NC_003084.1 + 75564 1.02 0.025057
Target:  5'- gUGGACCCAACAUUUGUGGUGCUcACAa -3'
miRNA:   3'- -ACCUGGGUUGUAAACACCACGAuUGU- -5'
11336 5' -48.6 NC_003084.1 + 49300 1.1 0.008233
Target:  5'- gUGGACCCAACAUUUGUGGUGCUAACAu -3'
miRNA:   3'- -ACCUGGGUUGUAAACACCACGAUUGU- -5'
11336 5' -48.6 NC_003084.1 + 49469 1.1 0.008233
Target:  5'- gUGGACCCAACAUUUGUGGUGCUAACAu -3'
miRNA:   3'- -ACCUGGGUUGUAAACACCACGAUUGU- -5'
11336 5' -48.6 NC_003084.1 + 68539 1.1 0.008233
Target:  5'- gUGGACCCAACAUUUGUGGUGCUAACAu -3'
miRNA:   3'- -ACCUGGGUUGUAAACACCACGAUUGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.