miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11337 5' -47.3 NC_003084.1 + 48060 0.67 0.995191
Target:  5'- ---cGUgGGGUGUgcgucgaggagUGGUGCUACCACCg -3'
miRNA:   3'- auuuCGaUUUACA-----------ACCGUGGUGGUGG- -5'
11337 5' -47.3 NC_003084.1 + 100966 0.67 0.995191
Target:  5'- gAAGGCUGca-GUcacCACCACCGCCg -3'
miRNA:   3'- aUUUCGAUuuaCAaccGUGGUGGUGG- -5'
11337 5' -47.3 NC_003084.1 + 96430 0.67 0.995191
Target:  5'- aGAAGCguacaGUcGcCGCCACCACCa -3'
miRNA:   3'- aUUUCGauuuaCAaCcGUGGUGGUGG- -5'
11337 5' -47.3 NC_003084.1 + 20105 0.67 0.994348
Target:  5'- gUAAAGUUGAccugUGGUuCCAUCACCu -3'
miRNA:   3'- -AUUUCGAUUuacaACCGuGGUGGUGG- -5'
11337 5' -47.3 NC_003084.1 + 64903 0.67 0.994258
Target:  5'- gUAGGGCggcAAAUGUUaGGUAgaguccauccuccUCACCACCu -3'
miRNA:   3'- -AUUUCGa--UUUACAA-CCGU-------------GGUGGUGG- -5'
11337 5' -47.3 NC_003084.1 + 54929 0.67 0.994166
Target:  5'- cGAAGUgGAGUGgacggccgaccGGUGCUACCACCc -3'
miRNA:   3'- aUUUCGaUUUACaa---------CCGUGGUGGUGG- -5'
11337 5' -47.3 NC_003084.1 + 46743 0.68 0.992306
Target:  5'- aAAAGUUGGAUGaagucGGUGCCccgguCCACCg -3'
miRNA:   3'- aUUUCGAUUUACaa---CCGUGGu----GGUGG- -5'
11337 5' -47.3 NC_003084.1 + 10488 0.68 0.992306
Target:  5'- --cAGCUGGagcGUGUUGGCcugguCCAC-ACCg -3'
miRNA:   3'- auuUCGAUU---UACAACCGu----GGUGgUGG- -5'
11337 5' -47.3 NC_003084.1 + 31876 0.68 0.991085
Target:  5'- cAGAGC-AAGU-UUGGCGauagCACCACCg -3'
miRNA:   3'- aUUUCGaUUUAcAACCGUg---GUGGUGG- -5'
11337 5' -47.3 NC_003084.1 + 49775 0.68 0.991085
Target:  5'- --uAGCUAAAg--UGaGCACCACUGCg -3'
miRNA:   3'- auuUCGAUUUacaAC-CGUGGUGGUGg -5'
11337 5' -47.3 NC_003084.1 + 94917 0.68 0.991085
Target:  5'- cAAGGCgauc-GUUGaGCcccacgaggGCCACCACCg -3'
miRNA:   3'- aUUUCGauuuaCAAC-CG---------UGGUGGUGG- -5'
11337 5' -47.3 NC_003084.1 + 89376 0.68 0.990555
Target:  5'- uUGAAGCUGGuuucgccggGGUGCCACUugCg -3'
miRNA:   3'- -AUUUCGAUUuacaa----CCGUGGUGGugG- -5'
11337 5' -47.3 NC_003084.1 + 98222 0.68 0.98957
Target:  5'- --cGGCgcgcgGGAUGUuggUGGCACCaaacguuGCCAUCg -3'
miRNA:   3'- auuUCGa----UUUACA---ACCGUGG-------UGGUGG- -5'
11337 5' -47.3 NC_003084.1 + 52673 0.68 0.988188
Target:  5'- -cGAGCUAuacAAUGgagGGUucgggugcauACCACUACCa -3'
miRNA:   3'- auUUCGAU---UUACaa-CCG----------UGGUGGUGG- -5'
11337 5' -47.3 NC_003084.1 + 53344 0.68 0.988188
Target:  5'- aAAGGUccaaUAGcgGUUGGCAaacuCCuCCACCa -3'
miRNA:   3'- aUUUCG----AUUuaCAACCGU----GGuGGUGG- -5'
11337 5' -47.3 NC_003084.1 + 22959 0.69 0.986489
Target:  5'- --cAGCUGAuuguUGUUGaGCGCCAaCAUCg -3'
miRNA:   3'- auuUCGAUUu---ACAAC-CGUGGUgGUGG- -5'
11337 5' -47.3 NC_003084.1 + 36277 0.69 0.986489
Target:  5'- uUAGGGCcAAAUcgUGGC-CCGCUGCCg -3'
miRNA:   3'- -AUUUCGaUUUAcaACCGuGGUGGUGG- -5'
11337 5' -47.3 NC_003084.1 + 42971 0.69 0.98461
Target:  5'- uUAAGGUgcGAUuuUUGGacaCACCACCACCa -3'
miRNA:   3'- -AUUUCGauUUAc-AACC---GUGGUGGUGG- -5'
11337 5' -47.3 NC_003084.1 + 49345 0.69 0.98461
Target:  5'- -cAAGCaacuuUAAAUGUUaGCACCACCAa- -3'
miRNA:   3'- auUUCG-----AUUUACAAcCGUGGUGGUgg -5'
11337 5' -47.3 NC_003084.1 + 40318 0.69 0.984411
Target:  5'- -uGGGCUGGguagcgcAUGaUGaGCACgGCCACCa -3'
miRNA:   3'- auUUCGAUU-------UACaAC-CGUGgUGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.