miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11338 3' -52.5 NC_003084.1 + 51318 0.66 0.944337
Target:  5'- ---uUGUGGgccgugGUUGaaggugGACCGGUGCUGu -3'
miRNA:   3'- cauuACACCa-----CGAUg-----CUGGCCACGAU- -5'
11338 3' -52.5 NC_003084.1 + 52977 0.66 0.939449
Target:  5'- aGUAcgGUGGUGCUAUaaaUGGUGgUAg -3'
miRNA:   3'- -CAUuaCACCACGAUGcugGCCACgAU- -5'
11338 3' -52.5 NC_003084.1 + 71033 0.66 0.934292
Target:  5'- cGUGGaGUGGUGCUcauCGACCGccGCa- -3'
miRNA:   3'- -CAUUaCACCACGAu--GCUGGCcaCGau -5'
11338 3' -52.5 NC_003084.1 + 38873 0.66 0.934292
Target:  5'- ----aGUGGUGCUcauACUGGUGCUc -3'
miRNA:   3'- cauuaCACCACGAugcUGGCCACGAu -5'
11338 3' -52.5 NC_003084.1 + 70131 0.67 0.923171
Target:  5'- -----uUGGUGggAUGACCGGUGUg- -3'
miRNA:   3'- cauuacACCACgaUGCUGGCCACGau -5'
11338 3' -52.5 NC_003084.1 + 51113 0.67 0.917205
Target:  5'- gGUGAUGUGGUgaGCUGa-ACCGGaGCUc -3'
miRNA:   3'- -CAUUACACCA--CGAUgcUGGCCaCGAu -5'
11338 3' -52.5 NC_003084.1 + 95467 0.67 0.8977
Target:  5'- ----aGUGGUGCUcCGugCGcGUGCc- -3'
miRNA:   3'- cauuaCACCACGAuGCugGC-CACGau -5'
11338 3' -52.5 NC_003084.1 + 51205 0.68 0.890672
Target:  5'- gGUGAUGUGGUgaGCUGa-ACCGGgGCUc -3'
miRNA:   3'- -CAUUACACCA--CGAUgcUGGCCaCGAu -5'
11338 3' -52.5 NC_003084.1 + 88549 0.69 0.807314
Target:  5'- uUGAUGUgguccGGUGCgAgGACCGGUGUg- -3'
miRNA:   3'- cAUUACA-----CCACGaUgCUGGCCACGau -5'
11338 3' -52.5 NC_003084.1 + 51281 0.7 0.768451
Target:  5'- gGUGAUGUGGUgaGCUG-GAgUGGUGCUc -3'
miRNA:   3'- -CAUUACACCA--CGAUgCUgGCCACGAu -5'
11338 3' -52.5 NC_003084.1 + 54932 0.71 0.737827
Target:  5'- aGUGGaGUGGacgGC--CGACCGGUGCUAc -3'
miRNA:   3'- -CAUUaCACCa--CGauGCUGGCCACGAU- -5'
11338 3' -52.5 NC_003084.1 + 9465 0.72 0.663243
Target:  5'- ----gGUGGUGCUACGAgUGGUGa-- -3'
miRNA:   3'- cauuaCACCACGAUGCUgGCCACgau -5'
11338 3' -52.5 NC_003084.1 + 53136 1.06 0.005291
Target:  5'- gGUAAUGUGGUGCUACGACCGGUGCUAc -3'
miRNA:   3'- -CAUUACACCACGAUGCUGGCCACGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.