Results 21 - 30 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11338 | 5' | -53.5 | NC_003084.1 | + | 49628 | 0.68 | 0.804629 |
Target: 5'- --aAGUucACCACUGgcaUGCGCAGUGg -3' miRNA: 3'- auaUCG--UGGUGGCaugACGCGUCACg -5' |
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11338 | 5' | -53.5 | NC_003084.1 | + | 93841 | 0.68 | 0.8221 |
Target: 5'- --gAGCgACCGCCGgACUGCgGCacaagauGGUGCc -3' miRNA: 3'- auaUCG-UGGUGGCaUGACG-CG-------UCACG- -5' |
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11338 | 5' | -53.5 | NC_003084.1 | + | 103627 | 0.68 | 0.831901 |
Target: 5'- --gAGCACCGCCGUgagcAUUGUaacgaugaGCAGgGCg -3' miRNA: 3'- auaUCGUGGUGGCA----UGACG--------CGUCaCG- -5' |
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11338 | 5' | -53.5 | NC_003084.1 | + | 65461 | 0.68 | 0.840599 |
Target: 5'- uUAUGGgACCACCGuUGgUGUGCcgAGUGg -3' miRNA: 3'- -AUAUCgUGGUGGC-AUgACGCG--UCACg -5' |
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11338 | 5' | -53.5 | NC_003084.1 | + | 82278 | 0.67 | 0.857354 |
Target: 5'- --aAGCACCACCGUAaUGCcaaguacguaAGUGUa -3' miRNA: 3'- auaUCGUGGUGGCAUgACGcg--------UCACG- -5' |
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11338 | 5' | -53.5 | NC_003084.1 | + | 64400 | 0.67 | 0.88077 |
Target: 5'- --gGGCAgguCCACCGUuagGUaGCGGUGCu -3' miRNA: 3'- auaUCGU---GGUGGCAugaCG-CGUCACG- -5' |
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11338 | 5' | -53.5 | NC_003084.1 | + | 42463 | 0.66 | 0.901973 |
Target: 5'- --cGGCACgACCgGUGCU-CGCGGUuauGCg -3' miRNA: 3'- auaUCGUGgUGG-CAUGAcGCGUCA---CG- -5' |
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11338 | 5' | -53.5 | NC_003084.1 | + | 3299 | 0.66 | 0.920846 |
Target: 5'- --gAGCuCCGCUgGUGCUGC-UGGUGCu -3' miRNA: 3'- auaUCGuGGUGG-CAUGACGcGUCACG- -5' |
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11338 | 5' | -53.5 | NC_003084.1 | + | 94309 | 0.66 | 0.920846 |
Target: 5'- cGUAGCACCGgaggGUugUGUGCcacuGGUGUa -3' miRNA: 3'- aUAUCGUGGUgg--CAugACGCG----UCACG- -5' |
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11338 | 5' | -53.5 | NC_003084.1 | + | 64572 | 0.75 | 0.441573 |
Target: 5'- --gAGCACCACCGUAgCUagaucggGCGCuuuuGUGCu -3' miRNA: 3'- auaUCGUGGUGGCAU-GA-------CGCGu---CACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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