miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11338 5' -53.5 NC_003084.1 + 64572 0.75 0.441573
Target:  5'- --gAGCACCACCGUAgCUagaucggGCGCuuuuGUGCu -3'
miRNA:   3'- auaUCGUGGUGGCAU-GA-------CGCGu---CACG- -5'
11338 5' -53.5 NC_003084.1 + 94309 0.66 0.920846
Target:  5'- cGUAGCACCGgaggGUugUGUGCcacuGGUGUa -3'
miRNA:   3'- aUAUCGUGGUgg--CAugACGCG----UCACG- -5'
11338 5' -53.5 NC_003084.1 + 3299 0.66 0.920846
Target:  5'- --gAGCuCCGCUgGUGCUGC-UGGUGCu -3'
miRNA:   3'- auaUCGuGGUGG-CAUGACGcGUCACG- -5'
11338 5' -53.5 NC_003084.1 + 42463 0.66 0.901973
Target:  5'- --cGGCACgACCgGUGCU-CGCGGUuauGCg -3'
miRNA:   3'- auaUCGUGgUGG-CAUGAcGCGUCA---CG- -5'
11338 5' -53.5 NC_003084.1 + 64400 0.67 0.88077
Target:  5'- --gGGCAgguCCACCGUuagGUaGCGGUGCu -3'
miRNA:   3'- auaUCGU---GGUGGCAugaCG-CGUCACG- -5'
11338 5' -53.5 NC_003084.1 + 82278 0.67 0.857354
Target:  5'- --aAGCACCACCGUAaUGCcaaguacguaAGUGUa -3'
miRNA:   3'- auaUCGUGGUGGCAUgACGcg--------UCACG- -5'
11338 5' -53.5 NC_003084.1 + 65461 0.68 0.840599
Target:  5'- uUAUGGgACCACCGuUGgUGUGCcgAGUGg -3'
miRNA:   3'- -AUAUCgUGGUGGC-AUgACGCG--UCACg -5'
11338 5' -53.5 NC_003084.1 + 103627 0.68 0.831901
Target:  5'- --gAGCACCGCCGUgagcAUUGUaacgaugaGCAGgGCg -3'
miRNA:   3'- auaUCGUGGUGGCA----UGACG--------CGUCaCG- -5'
11338 5' -53.5 NC_003084.1 + 93841 0.68 0.8221
Target:  5'- --gAGCgACCGCCGgACUGCgGCacaagauGGUGCc -3'
miRNA:   3'- auaUCG-UGGUGGCaUGACG-CG-------UCACG- -5'
11338 5' -53.5 NC_003084.1 + 49628 0.68 0.804629
Target:  5'- --aAGUucACCACUGgcaUGCGCAGUGg -3'
miRNA:   3'- auaUCG--UGGUGGCaugACGCGUCACg -5'
11338 5' -53.5 NC_003084.1 + 46263 0.71 0.682726
Target:  5'- gUAUAGCACCGgUcgAgaGUGCGGUGCg -3'
miRNA:   3'- -AUAUCGUGGUgGcaUgaCGCGUCACG- -5'
11338 5' -53.5 NC_003084.1 + 55004 0.72 0.585804
Target:  5'- gUGUAGCACC--UGUugUGCGCacaauGGUGCu -3'
miRNA:   3'- -AUAUCGUGGugGCAugACGCG-----UCACG- -5'
11338 5' -53.5 NC_003084.1 + 67203 0.72 0.585804
Target:  5'- --gAGUccACCACCGUGauCUGCGCGucgguGUGCg -3'
miRNA:   3'- auaUCG--UGGUGGCAU--GACGCGU-----CACG- -5'
11338 5' -53.5 NC_003084.1 + 35246 0.75 0.442529
Target:  5'- gGUAGCACCACUugaGCaUGUGCGGUGUc -3'
miRNA:   3'- aUAUCGUGGUGGca-UG-ACGCGUCACG- -5'
11338 5' -53.5 NC_003084.1 + 90319 0.68 0.801812
Target:  5'- ---cGCACagGCCGUACUGCucauuccaguacucGUAGUGUa -3'
miRNA:   3'- auauCGUGg-UGGCAUGACG--------------CGUCACG- -5'
11338 5' -53.5 NC_003084.1 + 10857 0.69 0.785562
Target:  5'- --cAGCGguUCACCGUACUGUGCuuccGCa -3'
miRNA:   3'- auaUCGU--GGUGGCAUGACGCGuca-CG- -5'
11338 5' -53.5 NC_003084.1 + 80738 0.71 0.667714
Target:  5'- -uUGGUAaucauguucaucaCACCGUAUUGCGUGGUGUa -3'
miRNA:   3'- auAUCGUg------------GUGGCAUGACGCGUCACG- -5'
11338 5' -53.5 NC_003084.1 + 33630 0.72 0.59654
Target:  5'- --aGGCGCUuugUCGUGCaGUGCGGUGCg -3'
miRNA:   3'- auaUCGUGGu--GGCAUGaCGCGUCACG- -5'
11338 5' -53.5 NC_003084.1 + 13688 0.74 0.501876
Target:  5'- --cGGCACCGCCGuUAC-GUGCAcauGUGCg -3'
miRNA:   3'- auaUCGUGGUGGC-AUGaCGCGU---CACG- -5'
11338 5' -53.5 NC_003084.1 + 31861 0.66 0.920846
Target:  5'- gAUAGCACCACCGcaauCU-CGaauauGUGCu -3'
miRNA:   3'- aUAUCGUGGUGGCau--GAcGCgu---CACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.