miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11339 3' -54.4 NC_003084.1 + 56695 0.66 0.915575
Target:  5'- cGUCGGCGCGCuuGGGCucacugACGcUCgCGg -3'
miRNA:   3'- aUAGCUGCGUGggCUUG------UGCaAGgGC- -5'
11339 3' -54.4 NC_003084.1 + 71843 0.66 0.896572
Target:  5'- gAUCuccaGCGCGCCCGAAUucaAUGUgaugaagCCCGa -3'
miRNA:   3'- aUAGc---UGCGUGGGCUUG---UGCAa------GGGC- -5'
11339 3' -54.4 NC_003084.1 + 29221 0.67 0.889748
Target:  5'- gUGUUGGCGCACgaguUCGggUAUGUUgccCCCGu -3'
miRNA:   3'- -AUAGCUGCGUG----GGCuuGUGCAA---GGGC- -5'
11339 3' -54.4 NC_003084.1 + 73469 0.67 0.875388
Target:  5'- -uUCG-CGCACCUcaAGCACGUUCgCGu -3'
miRNA:   3'- auAGCuGCGUGGGc-UUGUGCAAGgGC- -5'
11339 3' -54.4 NC_003084.1 + 22667 0.67 0.867861
Target:  5'- aGUCGGCGCACCuucuCGGGCAaaaGUUCgauacguugaCCGg -3'
miRNA:   3'- aUAGCUGCGUGG----GCUUGUg--CAAG----------GGC- -5'
11339 3' -54.4 NC_003084.1 + 24613 0.67 0.867861
Target:  5'- --aCGACcCGCCCGAccgaaacguACaaACGUUCCCa -3'
miRNA:   3'- auaGCUGcGUGGGCU---------UG--UGCAAGGGc -5'
11339 3' -54.4 NC_003084.1 + 61045 0.67 0.867861
Target:  5'- gAUCGAUGCAguccaccaacucUUCGGGCACGaggCCCGu -3'
miRNA:   3'- aUAGCUGCGU------------GGGCUUGUGCaa-GGGC- -5'
11339 3' -54.4 NC_003084.1 + 11656 0.67 0.86011
Target:  5'- cAUUGACGCACCCu--CACGgcgCUCa -3'
miRNA:   3'- aUAGCUGCGUGGGcuuGUGCaa-GGGc -5'
11339 3' -54.4 NC_003084.1 + 7599 0.7 0.722359
Target:  5'- --aUGAUGCccaACUCGAGCACGagCCCGa -3'
miRNA:   3'- auaGCUGCG---UGGGCUUGUGCaaGGGC- -5'
11339 3' -54.4 NC_003084.1 + 90278 0.71 0.649777
Target:  5'- --aCGGUGgACCCGAAUGCGUUuCCCGg -3'
miRNA:   3'- auaGCUGCgUGGGCUUGUGCAA-GGGC- -5'
11339 3' -54.4 NC_003084.1 + 12743 0.72 0.628766
Target:  5'- cUAUCGAUGCugCUG-GCACGaccUCCCGc -3'
miRNA:   3'- -AUAGCUGCGugGGCuUGUGCa--AGGGC- -5'
11339 3' -54.4 NC_003084.1 + 54824 1.06 0.00447
Target:  5'- gUAUCGACGCACCCGAACACGUUCCCGc -3'
miRNA:   3'- -AUAGCUGCGUGGGCUUGUGCAAGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.