miRNA display CGI


Results 1 - 14 of 14 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11339 5' -50.4 NC_003084.1 + 35667 0.66 0.991426
Target:  5'- uUCCGcACuuguAGGUGGUCucUCGC-CAUaCGCa -3'
miRNA:   3'- -GGGU-UGu---UCUACCAG--AGCGaGUA-GCG- -5'
11339 5' -50.4 NC_003084.1 + 87102 0.66 0.990163
Target:  5'- gCCCAACc-GAUGGUgCUCGaugaacaGUUGCa -3'
miRNA:   3'- -GGGUUGuuCUACCA-GAGCgag----UAGCG- -5'
11339 5' -50.4 NC_003084.1 + 98500 0.67 0.983602
Target:  5'- gCCUcaAGCAccAGGUGGuUCUUGCUCAggGUc -3'
miRNA:   3'- -GGG--UUGU--UCUACC-AGAGCGAGUagCG- -5'
11339 5' -50.4 NC_003084.1 + 87927 0.67 0.983602
Target:  5'- aUCCAACAGGGacgUGGUggguaUUUGUUCAgcaucUCGCa -3'
miRNA:   3'- -GGGUUGUUCU---ACCA-----GAGCGAGU-----AGCG- -5'
11339 5' -50.4 NC_003084.1 + 32414 0.67 0.981535
Target:  5'- gUguGC-AGGUGGUUUUGCUgGUCGUc -3'
miRNA:   3'- gGguUGuUCUACCAGAGCGAgUAGCG- -5'
11339 5' -50.4 NC_003084.1 + 50820 0.67 0.976826
Target:  5'- cUCCGGgGAaauGAUGaUCUCGCUCAUCu- -3'
miRNA:   3'- -GGGUUgUU---CUACcAGAGCGAGUAGcg -5'
11339 5' -50.4 NC_003084.1 + 104740 0.67 0.976826
Target:  5'- gCCAACucGGAUGGaCUCGUcaagCAgCGCa -3'
miRNA:   3'- gGGUUGu-UCUACCaGAGCGa---GUaGCG- -5'
11339 5' -50.4 NC_003084.1 + 63449 0.67 0.974165
Target:  5'- cCCCAugGAGAUGGaCUCuaUg--CGCg -3'
miRNA:   3'- -GGGUugUUCUACCaGAGcgAguaGCG- -5'
11339 5' -50.4 NC_003084.1 + 58088 0.69 0.939717
Target:  5'- cCCCAcguccggaaACgAAGGUGGcaaaauuggcaUCUCGUUCAUCGa -3'
miRNA:   3'- -GGGU---------UG-UUCUACC-----------AGAGCGAGUAGCg -5'
11339 5' -50.4 NC_003084.1 + 34784 0.69 0.934625
Target:  5'- aCgAGCGAGAUGGcacgCUuaCGCUCAcCGCc -3'
miRNA:   3'- gGgUUGUUCUACCa---GA--GCGAGUaGCG- -5'
11339 5' -50.4 NC_003084.1 + 75087 0.7 0.929268
Target:  5'- aCCCAACAAGcUGGUgUaGCUCA-CGa -3'
miRNA:   3'- -GGGUUGUUCuACCAgAgCGAGUaGCg -5'
11339 5' -50.4 NC_003084.1 + 2519 0.7 0.905197
Target:  5'- cCCCGACGAGGUGaUUUCGCgggcCAUCc- -3'
miRNA:   3'- -GGGUUGUUCUACcAGAGCGa---GUAGcg -5'
11339 5' -50.4 NC_003084.1 + 105447 0.71 0.898525
Target:  5'- gCCAACGccAGcuUGGUCUCgagcaGCUCAauUCGCg -3'
miRNA:   3'- gGGUUGU--UCu-ACCAGAG-----CGAGU--AGCG- -5'
11339 5' -50.4 NC_003084.1 + 54781 1.14 0.003735
Target:  5'- cCCCAACAAGAUGGUCUCGCUCAUCGCc -3'
miRNA:   3'- -GGGUUGUUCUACCAGAGCGAGUAGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.