miRNA display CGI


Results 1 - 15 of 15 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11340 3' -54.3 NC_003084.1 + 102271 0.66 0.903637
Target:  5'- gUACuUGCCGgcucAACCAGCGGuauCGAGa-- -3'
miRNA:   3'- -AUG-AUGGCa---UUGGUCGCCu--GCUCcug -5'
11340 3' -54.3 NC_003084.1 + 61410 0.66 0.896987
Target:  5'- gUGCUGCCGcAGCUgauCGacGACGAGGACc -3'
miRNA:   3'- -AUGAUGGCaUUGGuc-GC--CUGCUCCUG- -5'
11340 3' -54.3 NC_003084.1 + 100789 0.66 0.896987
Target:  5'- cGCUACUGcAGCCGaUGGAUGAGG-Cu -3'
miRNA:   3'- aUGAUGGCaUUGGUcGCCUGCUCCuG- -5'
11340 3' -54.3 NC_003084.1 + 54394 0.66 0.890088
Target:  5'- aGCUGCCGUAucuggacuuggaGCUGG-GGugGuGGGACu -3'
miRNA:   3'- aUGAUGGCAU------------UGGUCgCCugC-UCCUG- -5'
11340 3' -54.3 NC_003084.1 + 96604 0.66 0.890088
Target:  5'- gGCUGCgCG--ACCGGUugGGACGGGGuCg -3'
miRNA:   3'- aUGAUG-GCauUGGUCG--CCUGCUCCuG- -5'
11340 3' -54.3 NC_003084.1 + 33209 0.66 0.882943
Target:  5'- ---gACgGUGGCCcGUgugauGGGCGAGGACg -3'
miRNA:   3'- augaUGgCAUUGGuCG-----CCUGCUCCUG- -5'
11340 3' -54.3 NC_003084.1 + 15076 0.67 0.875558
Target:  5'- cGCUACuCG-AGCaGGUGGACGAGGu- -3'
miRNA:   3'- aUGAUG-GCaUUGgUCGCCUGCUCCug -5'
11340 3' -54.3 NC_003084.1 + 36334 0.67 0.867937
Target:  5'- ---aACCGUG--CGGCGuGAUGAGGACc -3'
miRNA:   3'- augaUGGCAUugGUCGC-CUGCUCCUG- -5'
11340 3' -54.3 NC_003084.1 + 5710 0.67 0.842886
Target:  5'- aACUGCCGUGGCCGaggagcaccugauGCGgGGCccGGGCu -3'
miRNA:   3'- aUGAUGGCAUUGGU-------------CGC-CUGcuCCUG- -5'
11340 3' -54.3 NC_003084.1 + 79817 0.67 0.83523
Target:  5'- cGCUACCacAGCCaccuuuGGUGGACuugGAGGACg -3'
miRNA:   3'- aUGAUGGcaUUGG------UCGCCUG---CUCCUG- -5'
11340 3' -54.3 NC_003084.1 + 73243 0.68 0.808577
Target:  5'- cUGCUACCGcUggUCAuCGGGCGcuacaAGGACa -3'
miRNA:   3'- -AUGAUGGC-AuuGGUcGCCUGC-----UCCUG- -5'
11340 3' -54.3 NC_003084.1 + 63984 0.7 0.678559
Target:  5'- -uCUACgGUG-CC-GCGGGCGAGGAa -3'
miRNA:   3'- auGAUGgCAUuGGuCGCCUGCUCCUg -5'
11340 3' -54.3 NC_003084.1 + 5911 0.71 0.657377
Target:  5'- --aUACCGUAgcGCCGGuUGGACcuGAGGACc -3'
miRNA:   3'- augAUGGCAU--UGGUC-GCCUG--CUCCUG- -5'
11340 3' -54.3 NC_003084.1 + 29569 0.8 0.217189
Target:  5'- gGCUACaGUaAACCGGUGGACGAGGAa -3'
miRNA:   3'- aUGAUGgCA-UUGGUCGCCUGCUCCUg -5'
11340 3' -54.3 NC_003084.1 + 63195 1.09 0.002838
Target:  5'- cUACUACCGUAACCAGCGGACGAGGACg -3'
miRNA:   3'- -AUGAUGGCAUUGGUCGCCUGCUCCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.