miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11341 3' -53.8 NC_003084.1 + 25083 0.66 0.924229
Target:  5'- uUGGCUUCGUuuccGACGUGGacGCGaacggucgaccguACUGCc -3'
miRNA:   3'- uGCCGAAGCAc---CUGCACU--CGU-------------UGACG- -5'
11341 3' -53.8 NC_003084.1 + 21013 0.66 0.91727
Target:  5'- uCGGCUUCGccagcacacccuuuUGGcCGUGAau-GCUGCa -3'
miRNA:   3'- uGCCGAAGC--------------ACCuGCACUcguUGACG- -5'
11341 3' -53.8 NC_003084.1 + 13145 0.66 0.915473
Target:  5'- uCGGCUaucuccuuaacuuggUCGUGGuuuGCGUaaauGGGCAGCguUGCg -3'
miRNA:   3'- uGCCGA---------------AGCACC---UGCA----CUCGUUG--ACG- -5'
11341 3' -53.8 NC_003084.1 + 95002 0.66 0.91304
Target:  5'- gGCGGCUUgcaCGaccGGGCGUGGGUuucACggGCg -3'
miRNA:   3'- -UGCCGAA---GCa--CCUGCACUCGu--UGa-CG- -5'
11341 3' -53.8 NC_003084.1 + 34418 0.66 0.906781
Target:  5'- aACGGUUUC-UGGugGUGAuCGACcacagcuacgUGCg -3'
miRNA:   3'- -UGCCGAAGcACCugCACUcGUUG----------ACG- -5'
11341 3' -53.8 NC_003084.1 + 25746 0.67 0.886496
Target:  5'- aGCGGCccgggugcaCGcUGGACGUGuGCGugUGg -3'
miRNA:   3'- -UGCCGaa-------GC-ACCUGCACuCGUugACg -5'
11341 3' -53.8 NC_003084.1 + 96629 0.67 0.886496
Target:  5'- gGCGaGCgUUCGUGG-CGcuagcuGCGGCUGCg -3'
miRNA:   3'- -UGC-CG-AAGCACCuGCacu---CGUUGACG- -5'
11341 3' -53.8 NC_003084.1 + 100360 0.68 0.856091
Target:  5'- uUGuGCagCGUuaGGGCGcugGAGCGGCUGCg -3'
miRNA:   3'- uGC-CGaaGCA--CCUGCa--CUCGUUGACG- -5'
11341 3' -53.8 NC_003084.1 + 11219 0.7 0.756114
Target:  5'- uGCGGCgaaaCGUGaGCGcaugGAGCAGCUGa -3'
miRNA:   3'- -UGCCGaa--GCACcUGCa---CUCGUUGACg -5'
11341 3' -53.8 NC_003084.1 + 35809 0.7 0.756114
Target:  5'- uAUGGCgauaUgGUGGGagugGUGcAGCGACUGCg -3'
miRNA:   3'- -UGCCGa---AgCACCUg---CAC-UCGUUGACG- -5'
11341 3' -53.8 NC_003084.1 + 96586 0.7 0.735003
Target:  5'- gACGGggUCGcaaaugguaccgaUGGugGUGgcGGCGACUGUa -3'
miRNA:   3'- -UGCCgaAGC-------------ACCugCAC--UCGUUGACG- -5'
11341 3' -53.8 NC_003084.1 + 40262 0.72 0.652563
Target:  5'- cACGGCUagaGUGGACGagcucGAGCAAaaGCu -3'
miRNA:   3'- -UGCCGAag-CACCUGCa----CUCGUUgaCG- -5'
11341 3' -53.8 NC_003084.1 + 101122 0.79 0.290249
Target:  5'- uGCGGCUUCGgcugUGGugGUGgcggcggugguGGUGACUGCa -3'
miRNA:   3'- -UGCCGAAGC----ACCugCAC-----------UCGUUGACG- -5'
11341 3' -53.8 NC_003084.1 + 64455 1.12 0.001895
Target:  5'- cACGGCUUCGUGGACGUGAGCAACUGCg -3'
miRNA:   3'- -UGCCGAAGCACCUGCACUCGUUGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.