miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11341 5' -56.2 NC_003084.1 + 70005 0.66 0.842569
Target:  5'- uUGACgccauaaaCGUGCGCGUACUuuugCAGGAGCg-- -3'
miRNA:   3'- -ACUG--------GCAUGCGCGUGG----GUCUUCGaca -5'
11341 5' -56.2 NC_003084.1 + 24257 0.66 0.825535
Target:  5'- -cACCGUAUGCGCAacgagUCCAuGGAGCgGg -3'
miRNA:   3'- acUGGCAUGCGCGU-----GGGU-CUUCGaCa -5'
11341 5' -56.2 NC_003084.1 + 730 0.67 0.789311
Target:  5'- cGACCGUAUugagGUGCGCUC-GAAGCg-- -3'
miRNA:   3'- aCUGGCAUG----CGCGUGGGuCUUCGaca -5'
11341 5' -56.2 NC_003084.1 + 25882 0.67 0.740748
Target:  5'- cGcACaCGUccaGCGUGCACCCGGGccGCUGg -3'
miRNA:   3'- aC-UG-GCA---UGCGCGUGGGUCUu-CGACa -5'
11341 5' -56.2 NC_003084.1 + 44067 0.67 0.740748
Target:  5'- gGuACCGUACGCaGCACUCGG-GGCaGUc -3'
miRNA:   3'- aC-UGGCAUGCG-CGUGGGUCuUCGaCA- -5'
11341 5' -56.2 NC_003084.1 + 72221 0.7 0.61632
Target:  5'- gUGACCGUGCcccaguuggGCGCaaACUUGGAAGUUGUc -3'
miRNA:   3'- -ACUGGCAUG---------CGCG--UGGGUCUUCGACA- -5'
11341 5' -56.2 NC_003084.1 + 35122 0.7 0.595343
Target:  5'- aUGACUGUGCGCGCGCgcacaaCAGGgccGGCUu- -3'
miRNA:   3'- -ACUGGCAUGCGCGUGg-----GUCU---UCGAca -5'
11341 5' -56.2 NC_003084.1 + 80262 0.72 0.483467
Target:  5'- cGACCaaUGCGUGCuCCCAGcGAGCUGa -3'
miRNA:   3'- aCUGGc-AUGCGCGuGGGUC-UUCGACa -5'
11341 5' -56.2 NC_003084.1 + 26776 0.72 0.483467
Target:  5'- aUGAgCCGUuuaaaGUGCGCCCGGAccguAGCUGg -3'
miRNA:   3'- -ACU-GGCAug---CGCGUGGGUCU----UCGACa -5'
11341 5' -56.2 NC_003084.1 + 35059 0.72 0.473761
Target:  5'- cGACCGUA---GCGCCCGGGAGCUc- -3'
miRNA:   3'- aCUGGCAUgcgCGUGGGUCUUCGAca -5'
11341 5' -56.2 NC_003084.1 + 9341 0.79 0.189862
Target:  5'- cUGGCCGUguACGgGCGCCCAGAGGUUc- -3'
miRNA:   3'- -ACUGGCA--UGCgCGUGGGUCUUCGAca -5'
11341 5' -56.2 NC_003084.1 + 64419 1.08 0.00205
Target:  5'- gUGACCGUACGCGCACCCAGAAGCUGUa -3'
miRNA:   3'- -ACUGGCAUGCGCGUGGGUCUUCGACA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.