miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11343 3' -47.8 NC_003084.1 + 91845 0.66 0.999322
Target:  5'- uCUGCUGCuGCUGc-UGCGGcugcaUGGUGGu -3'
miRNA:   3'- -GGCGAUGuUGACcaAUGCUa----ACCACC- -5'
11343 3' -47.8 NC_003084.1 + 29373 0.66 0.99916
Target:  5'- uCCGUcACGGCcg--UACGAUUGGUGc -3'
miRNA:   3'- -GGCGaUGUUGaccaAUGCUAACCACc -5'
11343 3' -47.8 NC_003084.1 + 1559 0.66 0.998737
Target:  5'- uUGCUGCAGCUacagcGG-UGCGAgaUGGaUGGa -3'
miRNA:   3'- gGCGAUGUUGA-----CCaAUGCUa-ACC-ACC- -5'
11343 3' -47.8 NC_003084.1 + 48307 0.67 0.998144
Target:  5'- cCCGCUAUAACguaacGGUUGgacuCG-UUGGUGc -3'
miRNA:   3'- -GGCGAUGUUGa----CCAAU----GCuAACCACc -5'
11343 3' -47.8 NC_003084.1 + 49159 0.67 0.99777
Target:  5'- aCGCUcgACAACuuuUGGUaccCGAUcGGUGGu -3'
miRNA:   3'- gGCGA--UGUUG---ACCAau-GCUAaCCACC- -5'
11343 3' -47.8 NC_003084.1 + 55442 0.67 0.997334
Target:  5'- gCUGCgGCGGCUGGcucaACGGggacGGUGGc -3'
miRNA:   3'- -GGCGaUGUUGACCaa--UGCUaa--CCACC- -5'
11343 3' -47.8 NC_003084.1 + 4704 0.67 0.996829
Target:  5'- gCGCUcaAGCUGGggccaaUACGGUUGGUu- -3'
miRNA:   3'- gGCGAugUUGACCa-----AUGCUAACCAcc -5'
11343 3' -47.8 NC_003084.1 + 48920 0.67 0.996829
Target:  5'- -aGC-ACAACuUGGUggACGAccGGUGGa -3'
miRNA:   3'- ggCGaUGUUG-ACCAa-UGCUaaCCACC- -5'
11343 3' -47.8 NC_003084.1 + 96610 0.67 0.996248
Target:  5'- -aGCUGCGGCUGcGcgAcCGGUUGGgacgGGg -3'
miRNA:   3'- ggCGAUGUUGAC-CaaU-GCUAACCa---CC- -5'
11343 3' -47.8 NC_003084.1 + 10370 0.68 0.995582
Target:  5'- aCGCUcCAGCUGGc--CGAggGGUGc -3'
miRNA:   3'- gGCGAuGUUGACCaauGCUaaCCACc -5'
11343 3' -47.8 NC_003084.1 + 106080 0.68 0.995582
Target:  5'- uUGCUACGGCUGcaacagUGCGAgaUGGaUGGg -3'
miRNA:   3'- gGCGAUGUUGACca----AUGCUa-ACC-ACC- -5'
11343 3' -47.8 NC_003084.1 + 2581 0.68 0.995364
Target:  5'- cCCGCUGCGuGCUGGUgaACGAcagUgugaaacggcucaaGGUGGc -3'
miRNA:   3'- -GGCGAUGU-UGACCAa-UGCUa--A--------------CCACC- -5'
11343 3' -47.8 NC_003084.1 + 10506 0.68 0.994822
Target:  5'- uUGC-ACGACUGGUg--GAUagGGUGGa -3'
miRNA:   3'- gGCGaUGUUGACCAaugCUAa-CCACC- -5'
11343 3' -47.8 NC_003084.1 + 15152 0.68 0.993868
Target:  5'- aCUGCgaaacCGACUGGUggaagcuUGCGAacagGGUGGc -3'
miRNA:   3'- -GGCGau---GUUGACCA-------AUGCUaa--CCACC- -5'
11343 3' -47.8 NC_003084.1 + 25591 0.69 0.98778
Target:  5'- gCGCUACcucaacauugcaAACUGGUcaACGGUggacaacgUGGUGGu -3'
miRNA:   3'- gGCGAUG------------UUGACCAa-UGCUA--------ACCACC- -5'
11343 3' -47.8 NC_003084.1 + 101127 0.7 0.979989
Target:  5'- gCgGCUGCGGCuucggcugUGGUggugGCGGcggUGGUGGu -3'
miRNA:   3'- -GgCGAUGUUG--------ACCAa---UGCUa--ACCACC- -5'
11343 3' -47.8 NC_003084.1 + 82732 0.71 0.965677
Target:  5'- cCCGagUACGAUgaUGGaUGCGAUUGGUGc -3'
miRNA:   3'- -GGCg-AUGUUG--ACCaAUGCUAACCACc -5'
11343 3' -47.8 NC_003084.1 + 33153 0.73 0.929992
Target:  5'- gCCGCaucgGCGuuGCUGGUgaagACGucgGGUGGg -3'
miRNA:   3'- -GGCGa---UGU--UGACCAa---UGCuaaCCACC- -5'
11343 3' -47.8 NC_003084.1 + 68358 0.73 0.918395
Target:  5'- -gGCUACAGCuUGGaUACGc-UGGUGGa -3'
miRNA:   3'- ggCGAUGUUG-ACCaAUGCuaACCACC- -5'
11343 3' -47.8 NC_003084.1 + 84324 0.74 0.905714
Target:  5'- -aGgUGCAGCUGGUggUGCGGUUGGg-- -3'
miRNA:   3'- ggCgAUGUUGACCA--AUGCUAACCacc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.