miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11346 3' -58.2 NC_003084.1 + 94797 0.66 0.759526
Target:  5'- aCGUUCUaacaaCugCUCGGCCGAGuGcagcuccuCCGCAa -3'
miRNA:   3'- -GUAAGG-----GugGAGCCGGCUC-Cu-------GGUGU- -5'
11346 3' -58.2 NC_003084.1 + 36297 0.66 0.749865
Target:  5'- --cUCCCA-CUCGGCUGgcgacauuAGGGCCAa- -3'
miRNA:   3'- guaAGGGUgGAGCCGGC--------UCCUGGUgu -5'
11346 3' -58.2 NC_003084.1 + 105636 0.66 0.72029
Target:  5'- uCAUUUagcaUCACCagUCGGCCGAGGugUcCAg -3'
miRNA:   3'- -GUAAG----GGUGG--AGCCGGCUCCugGuGU- -5'
11346 3' -58.2 NC_003084.1 + 1106 0.66 0.72029
Target:  5'- uCAUUUagcaUCACCagUCGGCCGAGGugUcCAg -3'
miRNA:   3'- -GUAAG----GGUGG--AGCCGGCUCCugGuGU- -5'
11346 3' -58.2 NC_003084.1 + 22642 0.67 0.710266
Target:  5'- --aUCCCACCaucaCGGUCGAguuGGGCUugGa -3'
miRNA:   3'- guaAGGGUGGa---GCCGGCU---CCUGGugU- -5'
11346 3' -58.2 NC_003084.1 + 48299 0.68 0.647997
Target:  5'- -uUUCCCGCCcCGGgcgcucaUCGAGGACCuguuCAu -3'
miRNA:   3'- guAAGGGUGGaGCC-------GGCUCCUGGu---GU- -5'
11346 3' -58.2 NC_003084.1 + 53063 0.69 0.587278
Target:  5'- aGUUUCCGCCgUGGUCaaGAGGACgGCAa -3'
miRNA:   3'- gUAAGGGUGGaGCCGG--CUCCUGgUGU- -5'
11346 3' -58.2 NC_003084.1 + 45944 0.69 0.556746
Target:  5'- ---gCCCGCCUCGGUu--GGACCAUu -3'
miRNA:   3'- guaaGGGUGGAGCCGgcuCCUGGUGu -5'
11346 3' -58.2 NC_003084.1 + 2880 0.69 0.546666
Target:  5'- --gUCCCuuuaauaucACCagUCGGCCGAGGgguccaGCCACGu -3'
miRNA:   3'- guaAGGG---------UGG--AGCCGGCUCC------UGGUGU- -5'
11346 3' -58.2 NC_003084.1 + 5703 0.7 0.516801
Target:  5'- uGUUCCaaacuGCCgUGGCCGAGGAgCACc -3'
miRNA:   3'- gUAAGGg----UGGaGCCGGCUCCUgGUGu -5'
11346 3' -58.2 NC_003084.1 + 12337 0.78 0.177021
Target:  5'- ---gCCCACCUCGGCCauGAGGugCAUc -3'
miRNA:   3'- guaaGGGUGGAGCCGG--CUCCugGUGu -5'
11346 3' -58.2 NC_003084.1 + 77093 1.08 0.001526
Target:  5'- cCAUUCCCACCUCGGCCGAGGACCACAc -3'
miRNA:   3'- -GUAAGGGUGGAGCCGGCUCCUGGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.