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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11347 | 3' | -54.4 | NC_003084.1 | + | 12968 | 0.66 | 0.886496 |
Target: 5'- uACGCGCGUUGAGCUacaucgcaacgcUGCCcaUUUaCGCa -3' miRNA: 3'- -UGCGCGCAACUUGA------------GCGGucAGA-GUG- -5' |
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11347 | 3' | -54.4 | NC_003084.1 | + | 81581 | 1.08 | 0.00292 |
Target: 5'- aACGCGCGUUGAACUCGCCAGUCUCACc -3' miRNA: 3'- -UGCGCGCAACUUGAGCGGUCAGAGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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