miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11348 5' -49.9 NC_003084.1 + 83174 0.66 0.991061
Target:  5'- cGGCGAGcUGAagAGCGagucggugGCCGUAa -3'
miRNA:   3'- -CCGCUC-ACU--UCGCauuuua--CGGCGUc -5'
11348 5' -49.9 NC_003084.1 + 85911 0.66 0.990283
Target:  5'- uGGCG-GUGGccaGGCGUGAAAUugagGCUuuGCGGu -3'
miRNA:   3'- -CCGCuCACU---UCGCAUUUUA----CGG--CGUC- -5'
11348 5' -49.9 NC_003084.1 + 86445 0.66 0.990283
Target:  5'- aGGCcauacaUGGAGCGUu---UGCUGCAGg -3'
miRNA:   3'- -CCGcuc---ACUUCGCAuuuuACGGCGUC- -5'
11348 5' -49.9 NC_003084.1 + 34923 0.66 0.987303
Target:  5'- uGGCG-GUG-AGCGUAAGcGUGCCa--- -3'
miRNA:   3'- -CCGCuCACuUCGCAUUU-UACGGcguc -5'
11348 5' -49.9 NC_003084.1 + 79113 0.66 0.987303
Target:  5'- gGGCGGGcGAAGCGUAcauguuccaguGAGUGaCGUg- -3'
miRNA:   3'- -CCGCUCaCUUCGCAU-----------UUUACgGCGuc -5'
11348 5' -49.9 NC_003084.1 + 63779 0.66 0.985388
Target:  5'- cGGUca-UGAAGCGUAAAucuggcaGUGCgGCGGg -3'
miRNA:   3'- -CCGcucACUUCGCAUUU-------UACGgCGUC- -5'
11348 5' -49.9 NC_003084.1 + 95781 0.67 0.976792
Target:  5'- uGGUgGAGUgcaccGAAGCGUGAAcAUGCC-CGGa -3'
miRNA:   3'- -CCG-CUCA-----CUUCGCAUUU-UACGGcGUC- -5'
11348 5' -49.9 NC_003084.1 + 62770 0.68 0.968005
Target:  5'- aGGUGAGUGggGUGgacc---CCGCAu -3'
miRNA:   3'- -CCGCUCACuuCGCauuuuacGGCGUc -5'
11348 5' -49.9 NC_003084.1 + 30415 0.68 0.957081
Target:  5'- cGGUGGGUGAGGCc--GGAUGCgGUg- -3'
miRNA:   3'- -CCGCUCACUUCGcauUUUACGgCGuc -5'
11348 5' -49.9 NC_003084.1 + 105195 0.69 0.938913
Target:  5'- aGCGGGUGGgagugauuucgaAGCGUAuAAAaGCCGguGg -3'
miRNA:   3'- cCGCUCACU------------UCGCAU-UUUaCGGCguC- -5'
11348 5' -49.9 NC_003084.1 + 54762 0.71 0.882249
Target:  5'- aGCGAGUGGAGCGauuuguacgAGAAccgGCUGCAc -3'
miRNA:   3'- cCGCUCACUUCGCa--------UUUUa--CGGCGUc -5'
11348 5' -49.9 NC_003084.1 + 11203 0.75 0.714265
Target:  5'- cGGUGAGUG-AGCGU--GAUGCgGCGa -3'
miRNA:   3'- -CCGCUCACuUCGCAuuUUACGgCGUc -5'
11348 5' -49.9 NC_003084.1 + 81801 1.11 0.005418
Target:  5'- aGGCGAGUGAAGCGUAAAAUGCCGCAGc -3'
miRNA:   3'- -CCGCUCACUUCGCAUUUUACGGCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.