miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11350 5' -52.3 NC_003084.1 + 20022 0.66 0.955266
Target:  5'- cCCgUGGCGCacgaaaCGUguAGAUGGGuCCAGUg- -3'
miRNA:   3'- -GG-ACCGCGg-----GUA--UCUACCU-GGUUAaa -5'
11350 5' -52.3 NC_003084.1 + 63756 0.66 0.955266
Target:  5'- gCCUGGUGgCCGUgggcacAGAUGGAgUCAAc-- -3'
miRNA:   3'- -GGACCGCgGGUA------UCUACCU-GGUUaaa -5'
11350 5' -52.3 NC_003084.1 + 63141 0.66 0.955266
Target:  5'- aCUGGUGCUCAc-GGUGGuGCCGAc-- -3'
miRNA:   3'- gGACCGCGGGUauCUACC-UGGUUaaa -5'
11350 5' -52.3 NC_003084.1 + 69965 0.66 0.951036
Target:  5'- gCUGGCGCgCAcguaaaacUGGuuaGGACCGAUg- -3'
miRNA:   3'- gGACCGCGgGU--------AUCua-CCUGGUUAaa -5'
11350 5' -52.3 NC_003084.1 + 78495 0.66 0.946546
Target:  5'- -aUGuGCGCCCAaucaggacguGGUGGugCAGUUUa -3'
miRNA:   3'- ggAC-CGCGGGUau--------CUACCugGUUAAA- -5'
11350 5' -52.3 NC_003084.1 + 32758 0.66 0.946546
Target:  5'- aCC-GGCGCCCcgauAUGGucaaagGGGCCGAa-- -3'
miRNA:   3'- -GGaCCGCGGG----UAUCua----CCUGGUUaaa -5'
11350 5' -52.3 NC_003084.1 + 99112 0.66 0.936776
Target:  5'- aCCgaaGCGCCC-UAGcuAUGGAUCGAUUUc -3'
miRNA:   3'- -GGac-CGCGGGuAUC--UACCUGGUUAAA- -5'
11350 5' -52.3 NC_003084.1 + 93382 0.66 0.936776
Target:  5'- aCC-GaGCGCCC--AGAUGGACCu---- -3'
miRNA:   3'- -GGaC-CGCGGGuaUCUACCUGGuuaaa -5'
11350 5' -52.3 NC_003084.1 + 87109 0.67 0.93149
Target:  5'- aCUGGCgGCCCAaccGAUGGugCu---- -3'
miRNA:   3'- gGACCG-CGGGUau-CUACCugGuuaaa -5'
11350 5' -52.3 NC_003084.1 + 80267 0.67 0.925936
Target:  5'- aCCa-GCGCCUugcaucUAGGUGGACCGAg-- -3'
miRNA:   3'- -GGacCGCGGGu-----AUCUACCUGGUUaaa -5'
11350 5' -52.3 NC_003084.1 + 94145 0.67 0.920112
Target:  5'- gUUGGC-CCUuuggugAGGUGGACCGAUg- -3'
miRNA:   3'- gGACCGcGGGua----UCUACCUGGUUAaa -5'
11350 5' -52.3 NC_003084.1 + 48307 0.67 0.91402
Target:  5'- cCCgGGCGCUCAUcGA-GGACCuGUUc -3'
miRNA:   3'- -GGaCCGCGGGUAuCUaCCUGGuUAAa -5'
11350 5' -52.3 NC_003084.1 + 91110 0.69 0.847612
Target:  5'- gUUGGUGUCCGUGcuUGGGCCAAc-- -3'
miRNA:   3'- gGACCGCGGGUAUcuACCUGGUUaaa -5'
11350 5' -52.3 NC_003084.1 + 51416 0.69 0.839043
Target:  5'- aCgUGG-GCCCGgguugaAGGUGGACCGGUg- -3'
miRNA:   3'- -GgACCgCGGGUa-----UCUACCUGGUUAaa -5'
11350 5' -52.3 NC_003084.1 + 54163 0.69 0.830262
Target:  5'- -gUGGUGCCCA-AGGUGGuCCGGg-- -3'
miRNA:   3'- ggACCGCGGGUaUCUACCuGGUUaaa -5'
11350 5' -52.3 NC_003084.1 + 63564 0.71 0.763663
Target:  5'- --cGGCGUCCAgcGA-GGACCGGUUg -3'
miRNA:   3'- ggaCCGCGGGUauCUaCCUGGUUAAa -5'
11350 5' -52.3 NC_003084.1 + 53809 0.72 0.66913
Target:  5'- aCUGGCGCuCCAcaucGAUGGACCu---- -3'
miRNA:   3'- gGACCGCG-GGUau--CUACCUGGuuaaa -5'
11350 5' -52.3 NC_003084.1 + 38258 0.74 0.561057
Target:  5'- uUUGGcCGCCCAUAGAUgcGGGCCuGUUUc -3'
miRNA:   3'- gGACC-GCGGGUAUCUA--CCUGGuUAAA- -5'
11350 5' -52.3 NC_003084.1 + 5212 0.75 0.529341
Target:  5'- --gGGCGCaCCAccggUAGGUGGACCGGUa- -3'
miRNA:   3'- ggaCCGCG-GGU----AUCUACCUGGUUAaa -5'
11350 5' -52.3 NC_003084.1 + 91211 1.08 0.004299
Target:  5'- cCCUGGCGCCCAUAGAUGGACCAAUUUa -3'
miRNA:   3'- -GGACCGCGGGUAUCUACCUGGUUAAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.