miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11351 3' -60.6 NC_003084.1 + 74659 0.66 0.665726
Target:  5'- uGGCCCaGCCGACa--CUCGGUCa-- -3'
miRNA:   3'- gCUGGGgUGGCUGgugGAGCCGGaag -5'
11351 3' -60.6 NC_003084.1 + 60443 0.66 0.665726
Target:  5'- -aGCCCCACCGcuGCagaACgUgGGCCUUg -3'
miRNA:   3'- gcUGGGGUGGC--UGg--UGgAgCCGGAAg -5'
11351 3' -60.6 NC_003084.1 + 20703 0.66 0.655665
Target:  5'- aGGCCaacaCCACCG-CCACCUCGuCCc-- -3'
miRNA:   3'- gCUGG----GGUGGCuGGUGGAGCcGGaag -5'
11351 3' -60.6 NC_003084.1 + 54267 0.66 0.635497
Target:  5'- gCGACCCC-UgGAuCCACCUCGGaCg-- -3'
miRNA:   3'- -GCUGGGGuGgCU-GGUGGAGCCgGaag -5'
11351 3' -60.6 NC_003084.1 + 41787 0.66 0.625406
Target:  5'- gCGACaCCACUGGucgcCCAUCUUGGCCcgCa -3'
miRNA:   3'- -GCUGgGGUGGCU----GGUGGAGCCGGaaG- -5'
11351 3' -60.6 NC_003084.1 + 104172 0.66 0.615319
Target:  5'- aCGACCgUCAUCGcgauGCUgACCUCGGCCg-- -3'
miRNA:   3'- -GCUGG-GGUGGC----UGG-UGGAGCCGGaag -5'
11351 3' -60.6 NC_003084.1 + 94290 0.66 0.604238
Target:  5'- aCGACaguaCCAUCGGuCCACCUCaccaaagGGCCa-- -3'
miRNA:   3'- -GCUGg---GGUGGCU-GGUGGAG-------CCGGaag -5'
11351 3' -60.6 NC_003084.1 + 45387 0.67 0.595189
Target:  5'- aCGACaCCCgaaCGACCugCUCgaGGCCa-- -3'
miRNA:   3'- -GCUG-GGGug-GCUGGugGAG--CCGGaag -5'
11351 3' -60.6 NC_003084.1 + 80844 0.67 0.585161
Target:  5'- gGGCCUCACCgGACCcgaauACaaaUCGGCCa-- -3'
miRNA:   3'- gCUGGGGUGG-CUGG-----UGg--AGCCGGaag -5'
11351 3' -60.6 NC_003084.1 + 9416 0.67 0.58416
Target:  5'- gCGGCCuuuaacgCCACCGGCUucacguagacCCUCGGCUcUCg -3'
miRNA:   3'- -GCUGG-------GGUGGCUGGu---------GGAGCCGGaAG- -5'
11351 3' -60.6 NC_003084.1 + 105790 0.67 0.575165
Target:  5'- aGugCCCAagcuacCUGGaCACCUCGGCCg-- -3'
miRNA:   3'- gCugGGGU------GGCUgGUGGAGCCGGaag -5'
11351 3' -60.6 NC_003084.1 + 47102 0.67 0.565209
Target:  5'- cCGAgCCUCAccCCGACCAaUUCGGCCg-- -3'
miRNA:   3'- -GCU-GGGGU--GGCUGGUgGAGCCGGaag -5'
11351 3' -60.6 NC_003084.1 + 49034 0.67 0.565209
Target:  5'- -aACCCCgguCGACCGCCaagagUUGGCUUUCg -3'
miRNA:   3'- gcUGGGGug-GCUGGUGG-----AGCCGGAAG- -5'
11351 3' -60.6 NC_003084.1 + 38217 0.67 0.562231
Target:  5'- aGACUCUGCCGugcaccccucaguuACCACUugaagggcggUCGGCUUUCg -3'
miRNA:   3'- gCUGGGGUGGC--------------UGGUGG----------AGCCGGAAG- -5'
11351 3' -60.6 NC_003084.1 + 95813 0.68 0.525897
Target:  5'- aCGACCaCCACCcagucgGACaACCUCGaGCCUc- -3'
miRNA:   3'- -GCUGG-GGUGG------CUGgUGGAGC-CGGAag -5'
11351 3' -60.6 NC_003084.1 + 94941 0.69 0.450784
Target:  5'- gGGCCaCCACCGGauCCACCUUGcGCUg-- -3'
miRNA:   3'- gCUGG-GGUGGCU--GGUGGAGC-CGGaag -5'
11351 3' -60.6 NC_003084.1 + 97216 0.69 0.432929
Target:  5'- uCGGCCaUCACCaaaucGGCCAgCUCGGCCa-- -3'
miRNA:   3'- -GCUGG-GGUGG-----CUGGUgGAGCCGGaag -5'
11351 3' -60.6 NC_003084.1 + 26787 0.7 0.424157
Target:  5'- uCGGCCCCGaugaggcaCaACCGCUUCGGCCa-- -3'
miRNA:   3'- -GCUGGGGUg-------GcUGGUGGAGCCGGaag -5'
11351 3' -60.6 NC_003084.1 + 6665 0.7 0.390161
Target:  5'- uCGACCCCACaucgcacuCCACCUCGauaauauuaucGUCUUCg -3'
miRNA:   3'- -GCUGGGGUGgcu-----GGUGGAGC-----------CGGAAG- -5'
11351 3' -60.6 NC_003084.1 + 5852 0.71 0.342626
Target:  5'- gGGCCCCGCaucagGugCuCCUCGGCCa-- -3'
miRNA:   3'- gCUGGGGUGg----CugGuGGAGCCGGaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.