miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11354 3' -53.1 NC_003084.1 + 53362 0.66 0.936823
Target:  5'- -gUCAcgGUCGUGCGGUgaaaaGGuCCAAUa -3'
miRNA:   3'- ggAGUuaCAGCGUGCCGaa---CC-GGUUG- -5'
11354 3' -53.1 NC_003084.1 + 62161 0.66 0.936823
Target:  5'- --gCGGUugUGCACGGUUUGGaCCGGCu -3'
miRNA:   3'- ggaGUUAcaGCGUGCCGAACC-GGUUG- -5'
11354 3' -53.1 NC_003084.1 + 4966 0.66 0.936823
Target:  5'- aCCUCGAUGgUGCGCaGUUccauacguuggUGGCCGGg -3'
miRNA:   3'- -GGAGUUACaGCGUGcCGA-----------ACCGGUUg -5'
11354 3' -53.1 NC_003084.1 + 761 0.66 0.936823
Target:  5'- gUUCAG-GUCGCGCuGCacaucuucGGCCAACa -3'
miRNA:   3'- gGAGUUaCAGCGUGcCGaa------CCGGUUG- -5'
11354 3' -53.1 NC_003084.1 + 70066 0.66 0.936823
Target:  5'- gCCUCAAUGUUcccCGgGGCaaacgUGGCCGu- -3'
miRNA:   3'- -GGAGUUACAGc--GUgCCGa----ACCGGUug -5'
11354 3' -53.1 NC_003084.1 + 7835 0.66 0.926144
Target:  5'- gCUUGAUGUCGUGCGGg-UGGUCcuCa -3'
miRNA:   3'- gGAGUUACAGCGUGCCgaACCGGuuG- -5'
11354 3' -53.1 NC_003084.1 + 36976 0.66 0.926144
Target:  5'- -gUCGugcuAUGUCGC-UGGUUUcgaGGCCAACg -3'
miRNA:   3'- ggAGU----UACAGCGuGCCGAA---CCGGUUG- -5'
11354 3' -53.1 NC_003084.1 + 47599 0.66 0.926144
Target:  5'- aCUC----UCGCACGcGCUUGGUguACg -3'
miRNA:   3'- gGAGuuacAGCGUGC-CGAACCGguUG- -5'
11354 3' -53.1 NC_003084.1 + 55956 0.66 0.926144
Target:  5'- uCCUCAAac-CGCucCaGCUUGGCCAAg -3'
miRNA:   3'- -GGAGUUacaGCGu-GcCGAACCGGUUg -5'
11354 3' -53.1 NC_003084.1 + 101142 0.66 0.926144
Target:  5'- gCCUCGAUucagGUUGCggcuGCGGCUUcGGCUg-- -3'
miRNA:   3'- -GGAGUUA----CAGCG----UGCCGAA-CCGGuug -5'
11354 3' -53.1 NC_003084.1 + 86785 0.67 0.91442
Target:  5'- cCCUgAucGUG-CGCuCGGCcucGGCCAACa -3'
miRNA:   3'- -GGAgU--UACaGCGuGCCGaa-CCGGUUG- -5'
11354 3' -53.1 NC_003084.1 + 57631 0.67 0.894892
Target:  5'- --aCGAUGUUGUugGGCcgGGCCu-- -3'
miRNA:   3'- ggaGUUACAGCGugCCGaaCCGGuug -5'
11354 3' -53.1 NC_003084.1 + 97659 0.67 0.887875
Target:  5'- gCUUuggaAAUGUUGCGuCGGCUggagccguUGGCCGAg -3'
miRNA:   3'- gGAG----UUACAGCGU-GCCGA--------ACCGGUUg -5'
11354 3' -53.1 NC_003084.1 + 67127 0.68 0.865365
Target:  5'- gCUCAAaucUCGcCACGGCUUGuaCGACu -3'
miRNA:   3'- gGAGUUac-AGC-GUGCCGAACcgGUUG- -5'
11354 3' -53.1 NC_003084.1 + 480 0.68 0.857394
Target:  5'- aCCcCGuUGgCGCACGGCaaacgGGCCAAUu -3'
miRNA:   3'- -GGaGUuACaGCGUGCCGaa---CCGGUUG- -5'
11354 3' -53.1 NC_003084.1 + 59622 0.69 0.805164
Target:  5'- aCUCAAUGgacUGCACGGUUgGGCUg-- -3'
miRNA:   3'- gGAGUUACa--GCGUGCCGAaCCGGuug -5'
11354 3' -53.1 NC_003084.1 + 95100 0.7 0.746787
Target:  5'- gCUUGGUGU-GCACGGCuUUGGCUAc- -3'
miRNA:   3'- gGAGUUACAgCGUGCCG-AACCGGUug -5'
11354 3' -53.1 NC_003084.1 + 60758 0.73 0.630032
Target:  5'- gCUCGGgaGUCGUgcacaacuggaagGCGGaCUUGGCCGGCa -3'
miRNA:   3'- gGAGUUa-CAGCG-------------UGCC-GAACCGGUUG- -5'
11354 3' -53.1 NC_003084.1 + 97932 1.11 0.002706
Target:  5'- gCCUCAAUGUCGCACGGCUUGGCCAACc -3'
miRNA:   3'- -GGAGUUACAGCGUGCCGAACCGGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.