miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11354 5' -56.1 NC_003084.1 + 17568 0.66 0.884574
Target:  5'- aCGGcgaGCGCUGUUCAgCCgUUuGCCCa -3'
miRNA:   3'- -GCCaagUGCGGCAAGU-GGgAGcUGGG- -5'
11354 5' -56.1 NC_003084.1 + 57381 0.66 0.884574
Target:  5'- gGGUUCgaagauuauGCGCCGUauggaCC-CGGCCCa -3'
miRNA:   3'- gCCAAG---------UGCGGCAagug-GGaGCUGGG- -5'
11354 5' -56.1 NC_003084.1 + 17846 0.66 0.884574
Target:  5'- uGGacggCACGCCc-UCGCCUUCaACCCc -3'
miRNA:   3'- gCCaa--GUGCGGcaAGUGGGAGcUGGG- -5'
11354 5' -56.1 NC_003084.1 + 39944 0.66 0.877502
Target:  5'- uGGUcguccccacauUCACGCUuggCACCCUUGACg- -3'
miRNA:   3'- gCCA-----------AGUGCGGcaaGUGGGAGCUGgg -5'
11354 5' -56.1 NC_003084.1 + 87101 0.66 0.877502
Target:  5'- aGGUUCA-GCUGUUCgauaauuuuACCC-CGACUa -3'
miRNA:   3'- gCCAAGUgCGGCAAG---------UGGGaGCUGGg -5'
11354 5' -56.1 NC_003084.1 + 97472 0.66 0.854983
Target:  5'- -----gGCGCCGaUUCACCCUCGuaGCUg -3'
miRNA:   3'- gccaagUGCGGC-AAGUGGGAGC--UGGg -5'
11354 5' -56.1 NC_003084.1 + 9400 0.67 0.813483
Target:  5'- cCGGcUUCACGUag---ACCCUCGGCUCu -3'
miRNA:   3'- -GCC-AAGUGCGgcaagUGGGAGCUGGG- -5'
11354 5' -56.1 NC_003084.1 + 58234 0.67 0.801974
Target:  5'- aGGUUgaagggaagagugcUACGCUGggCGCCguaCUCGACCUc -3'
miRNA:   3'- gCCAA--------------GUGCGGCaaGUGG---GAGCUGGG- -5'
11354 5' -56.1 NC_003084.1 + 8839 0.68 0.777256
Target:  5'- gGGUUC-CGCCG---ACCCUCGcgACCg -3'
miRNA:   3'- gCCAAGuGCGGCaagUGGGAGC--UGGg -5'
11354 5' -56.1 NC_003084.1 + 765 0.7 0.658388
Target:  5'- aGG-UCGCGCUGcaCAUCUUCGGCCa -3'
miRNA:   3'- gCCaAGUGCGGCaaGUGGGAGCUGGg -5'
11354 5' -56.1 NC_003084.1 + 20756 0.73 0.496921
Target:  5'- uGGUguaCAUGuCUGUgcgggCACCUUCGGCCCg -3'
miRNA:   3'- gCCAa--GUGC-GGCAa----GUGGGAGCUGGG- -5'
11354 5' -56.1 NC_003084.1 + 81761 0.83 0.141047
Target:  5'- uGGUUCGCGCCGUgggCACCCUgaucaaccUGACCg -3'
miRNA:   3'- gCCAAGUGCGGCAa--GUGGGA--------GCUGGg -5'
11354 5' -56.1 NC_003084.1 + 97898 1.13 0.001393
Target:  5'- gCGGUUCACGCCGUUCACCCUCGACCCg -3'
miRNA:   3'- -GCCAAGUGCGGCAAGUGGGAGCUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.