miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11355 3' -49.5 NC_003084.1 + 70450 0.66 0.993691
Target:  5'- uGC-CCACAAacugGAUaUCguaCAGGUUCACAa -3'
miRNA:   3'- -CGaGGUGUUa---CUA-AGa--GUCCAGGUGU- -5'
11355 3' -49.5 NC_003084.1 + 31834 0.66 0.992676
Target:  5'- uGCUCCAauucGUGGcccucgcaCUCGGGaUCCACAu -3'
miRNA:   3'- -CGAGGUgu--UACUaa------GAGUCC-AGGUGU- -5'
11355 3' -49.5 NC_003084.1 + 93148 0.67 0.987255
Target:  5'- cGCU-CACAcgGGUccaaaUCUCuccauucaacGGGUCCACAc -3'
miRNA:   3'- -CGAgGUGUuaCUA-----AGAG----------UCCAGGUGU- -5'
11355 3' -49.5 NC_003084.1 + 94682 0.67 0.979165
Target:  5'- gGCUCCAUAc-GAUUCUU--GUCCGCGu -3'
miRNA:   3'- -CGAGGUGUuaCUAAGAGucCAGGUGU- -5'
11355 3' -49.5 NC_003084.1 + 47384 0.68 0.976386
Target:  5'- gGCUCCagugcACGAUGGUuaccgugguccggUCaccgucCAGGUCCGCAu -3'
miRNA:   3'- -CGAGG-----UGUUACUA-------------AGa-----GUCCAGGUGU- -5'
11355 3' -49.5 NC_003084.1 + 69915 0.68 0.973918
Target:  5'- uGCUCCGCucGAUGGUgccgCUagAGGUUCGCu -3'
miRNA:   3'- -CGAGGUG--UUACUAa---GAg-UCCAGGUGu -5'
11355 3' -49.5 NC_003084.1 + 81359 0.69 0.960666
Target:  5'- cGCUCCAUAGUGAggCuUCAGuuugcacagCCACAc -3'
miRNA:   3'- -CGAGGUGUUACUaaG-AGUCca-------GGUGU- -5'
11355 3' -49.5 NC_003084.1 + 39974 0.69 0.956734
Target:  5'- cGCUCCuuCAAUGGgga-CAGGUCCgGCAa -3'
miRNA:   3'- -CGAGGu-GUUACUaagaGUCCAGG-UGU- -5'
11355 3' -49.5 NC_003084.1 + 106674 0.69 0.956734
Target:  5'- -gUCCACGAUGcg-CUgCAGGUCCuCAu -3'
miRNA:   3'- cgAGGUGUUACuaaGA-GUCCAGGuGU- -5'
11355 3' -49.5 NC_003084.1 + 17499 0.69 0.952543
Target:  5'- aGCUUgGCAAaGAUUCUCgaguugagcgccGGGUCCAg- -3'
miRNA:   3'- -CGAGgUGUUaCUAAGAG------------UCCAGGUgu -5'
11355 3' -49.5 NC_003084.1 + 100690 0.99 0.035912
Target:  5'- cGCUCCACAAUGAUcUUCAGGUCCACAu -3'
miRNA:   3'- -CGAGGUGUUACUAaGAGUCCAGGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.