Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11355 | 3' | -49.5 | NC_003084.1 | + | 17499 | 0.69 | 0.952543 |
Target: 5'- aGCUUgGCAAaGAUUCUCgaguugagcgccGGGUCCAg- -3' miRNA: 3'- -CGAGgUGUUaCUAAGAG------------UCCAGGUgu -5' |
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11355 | 3' | -49.5 | NC_003084.1 | + | 31834 | 0.66 | 0.992676 |
Target: 5'- uGCUCCAauucGUGGcccucgcaCUCGGGaUCCACAu -3' miRNA: 3'- -CGAGGUgu--UACUaa------GAGUCC-AGGUGU- -5' |
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11355 | 3' | -49.5 | NC_003084.1 | + | 39974 | 0.69 | 0.956734 |
Target: 5'- cGCUCCuuCAAUGGgga-CAGGUCCgGCAa -3' miRNA: 3'- -CGAGGu-GUUACUaagaGUCCAGG-UGU- -5' |
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11355 | 3' | -49.5 | NC_003084.1 | + | 47384 | 0.68 | 0.976386 |
Target: 5'- gGCUCCagugcACGAUGGUuaccgugguccggUCaccgucCAGGUCCGCAu -3' miRNA: 3'- -CGAGG-----UGUUACUA-------------AGa-----GUCCAGGUGU- -5' |
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11355 | 3' | -49.5 | NC_003084.1 | + | 69915 | 0.68 | 0.973918 |
Target: 5'- uGCUCCGCucGAUGGUgccgCUagAGGUUCGCu -3' miRNA: 3'- -CGAGGUG--UUACUAa---GAg-UCCAGGUGu -5' |
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11355 | 3' | -49.5 | NC_003084.1 | + | 70450 | 0.66 | 0.993691 |
Target: 5'- uGC-CCACAAacugGAUaUCguaCAGGUUCACAa -3' miRNA: 3'- -CGaGGUGUUa---CUA-AGa--GUCCAGGUGU- -5' |
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11355 | 3' | -49.5 | NC_003084.1 | + | 81359 | 0.69 | 0.960666 |
Target: 5'- cGCUCCAUAGUGAggCuUCAGuuugcacagCCACAc -3' miRNA: 3'- -CGAGGUGUUACUaaG-AGUCca-------GGUGU- -5' |
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11355 | 3' | -49.5 | NC_003084.1 | + | 93148 | 0.67 | 0.987255 |
Target: 5'- cGCU-CACAcgGGUccaaaUCUCuccauucaacGGGUCCACAc -3' miRNA: 3'- -CGAgGUGUuaCUA-----AGAG----------UCCAGGUGU- -5' |
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11355 | 3' | -49.5 | NC_003084.1 | + | 94682 | 0.67 | 0.979165 |
Target: 5'- gGCUCCAUAc-GAUUCUU--GUCCGCGu -3' miRNA: 3'- -CGAGGUGUuaCUAAGAGucCAGGUGU- -5' |
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11355 | 3' | -49.5 | NC_003084.1 | + | 100690 | 0.99 | 0.035912 |
Target: 5'- cGCUCCACAAUGAUcUUCAGGUCCACAu -3' miRNA: 3'- -CGAGGUGUUACUAaGAGUCCAGGUGU- -5' |
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11355 | 3' | -49.5 | NC_003084.1 | + | 106674 | 0.69 | 0.956734 |
Target: 5'- -gUCCACGAUGcg-CUgCAGGUCCuCAu -3' miRNA: 3'- cgAGGUGUUACuaaGA-GUCCAGGuGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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