miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11356 5' -55.5 NC_003084.1 + 35377 0.66 0.852014
Target:  5'- cGCAcAUGCUCAa-GUGGUGCUaccaCCUcGCg -3'
miRNA:   3'- aUGU-UACGAGUgcCGCCACGA----GGA-CG- -5'
11356 5' -55.5 NC_003084.1 + 18451 0.66 0.843726
Target:  5'- aGCAGagaugGCccgCACGGUGGUGgUUUUGCc -3'
miRNA:   3'- aUGUUa----CGa--GUGCCGCCACgAGGACG- -5'
11356 5' -55.5 NC_003084.1 + 54155 0.67 0.808577
Target:  5'- cUACGG-GCacCACGGgacCGGUGCUgCUGCu -3'
miRNA:   3'- -AUGUUaCGa-GUGCC---GCCACGAgGACG- -5'
11356 5' -55.5 NC_003084.1 + 107244 0.67 0.788979
Target:  5'- -----aGCUCAaccuucuCGGUGGUaGCUCgCUGCa -3'
miRNA:   3'- auguuaCGAGU-------GCCGCCA-CGAG-GACG- -5'
11356 5' -55.5 NC_003084.1 + 30903 0.67 0.780368
Target:  5'- --gGGUGCagUugGGCGGagugUGgUCCUGCa -3'
miRNA:   3'- augUUACGa-GugCCGCC----ACgAGGACG- -5'
11356 5' -55.5 NC_003084.1 + 91566 0.69 0.657377
Target:  5'- ---uAUGCUgaacCAcCGGUGGUccGCUCCUGCg -3'
miRNA:   3'- auguUACGA----GU-GCCGCCA--CGAGGACG- -5'
11356 5' -55.5 NC_003084.1 + 82408 0.7 0.583022
Target:  5'- gUACuugGCaUUACGGUGGUGCUUCggGCu -3'
miRNA:   3'- -AUGuuaCG-AGUGCCGCCACGAGGa-CG- -5'
11356 5' -55.5 NC_003084.1 + 63140 0.72 0.480527
Target:  5'- gACuGGUGCUCACGGUGGUGCcgacaCgGCu -3'
miRNA:   3'- aUG-UUACGAGUGCCGCCACGag---GaCG- -5'
11356 5' -55.5 NC_003084.1 + 73979 0.75 0.36129
Target:  5'- cACAAauucuUGCUgaACGGCGGUGUuacagauUCCUGCa -3'
miRNA:   3'- aUGUU-----ACGAg-UGCCGCCACG-------AGGACG- -5'
11356 5' -55.5 NC_003084.1 + 62394 0.75 0.32999
Target:  5'- --uGGUGCUCGCGGUGGUGCUacgGUa -3'
miRNA:   3'- augUUACGAGUGCCGCCACGAggaCG- -5'
11356 5' -55.5 NC_003084.1 + 103756 1.1 0.001592
Target:  5'- uUACAAUGCUCACGGCGGUGCUCCUGCu -3'
miRNA:   3'- -AUGUUACGAGUGCCGCCACGAGGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.