miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11357 3' -48.3 NC_003084.1 + 98877 0.67 0.99589
Target:  5'- gUACGAUgGUGCUAaacucggugcCAACGUUGUgAa -3'
miRNA:   3'- gAUGCUAgCACGGUa---------GUUGCAACAgU- -5'
11357 3' -48.3 NC_003084.1 + 5022 0.67 0.99589
Target:  5'- uUugGAUCuGUGCCAaCGAUGUgaUCAa -3'
miRNA:   3'- gAugCUAG-CACGGUaGUUGCAacAGU- -5'
11357 3' -48.3 NC_003084.1 + 17971 0.68 0.984958
Target:  5'- -gGCGAgggCGUGCCGUCcACGUacgGcCAa -3'
miRNA:   3'- gaUGCUa--GCACGGUAGuUGCAa--CaGU- -5'
11357 3' -48.3 NC_003084.1 + 19186 0.68 0.984958
Target:  5'- aUGCGuUCGUGUacuuggUAUCAGgGUUGUCGg -3'
miRNA:   3'- gAUGCuAGCACG------GUAGUUgCAACAGU- -5'
11357 3' -48.3 NC_003084.1 + 104751 0.95 0.082167
Target:  5'- cCUACGAUCGUGCCAUCAACGUguUCAa -3'
miRNA:   3'- -GAUGCUAGCACGGUAGUUGCAacAGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.