miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11357 5' -47 NC_003084.1 + 20392 0.66 0.999395
Target:  5'- gGUGAAUGUgGugaggugcGCAACccGAUGGUCc -3'
miRNA:   3'- gUACUUGCAgC--------UGUUGuaCUACCAGu -5'
11357 5' -47 NC_003084.1 + 96859 0.66 0.999065
Target:  5'- uGUGGugGUUGugGAaccgagGGUGGUCu -3'
miRNA:   3'- gUACUugCAGCugUUgua---CUACCAGu -5'
11357 5' -47 NC_003084.1 + 107283 0.67 0.998848
Target:  5'- ---aAGCGgcgCGACGAUAUGAuugaggacauUGGUCAg -3'
miRNA:   3'- guacUUGCa--GCUGUUGUACU----------ACCAGU- -5'
11357 5' -47 NC_003084.1 + 101997 0.67 0.997928
Target:  5'- -cUGGACGauaUCGugAaggACGUGAUGGUgCAg -3'
miRNA:   3'- guACUUGC---AGCugU---UGUACUACCA-GU- -5'
11357 5' -47 NC_003084.1 + 35802 0.67 0.997928
Target:  5'- --cGAACGguaUGGCGAUAUGGUGGg-- -3'
miRNA:   3'- guaCUUGCa--GCUGUUGUACUACCagu -5'
11357 5' -47 NC_003084.1 + 25614 0.68 0.997021
Target:  5'- gGUcAACgGUgGACAACGUGGUGGUg- -3'
miRNA:   3'- gUAcUUG-CAgCUGUUGUACUACCAgu -5'
11357 5' -47 NC_003084.1 + 25273 0.68 0.996969
Target:  5'- -cUGAcCGUCGAUcgaugcaucucgaAGCGUGAUGgGUCGg -3'
miRNA:   3'- guACUuGCAGCUG-------------UUGUACUAC-CAGU- -5'
11357 5' -47 NC_003084.1 + 67414 0.69 0.992059
Target:  5'- gUAUGAgcacgagACGuUCGACGAgGUGAgGGUCGa -3'
miRNA:   3'- -GUACU-------UGC-AGCUGUUgUACUaCCAGU- -5'
11357 5' -47 NC_003084.1 + 6506 0.72 0.958206
Target:  5'- --cGAACGg-GACAuuGUGGUGGUCAa -3'
miRNA:   3'- guaCUUGCagCUGUugUACUACCAGU- -5'
11357 5' -47 NC_003084.1 + 40821 0.74 0.90423
Target:  5'- uCGUGGACGUCGAU--CGUGAagcggacaagUGGUCGa -3'
miRNA:   3'- -GUACUUGCAGCUGuuGUACU----------ACCAGU- -5'
11357 5' -47 NC_003084.1 + 104715 1.1 0.013572
Target:  5'- cCAUGAACGUCGACAACAUGAUGGUCAg -3'
miRNA:   3'- -GUACUUGCAGCUGUUGUACUACCAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.