Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11357 | 5' | -47 | NC_003084.1 | + | 6506 | 0.72 | 0.958206 |
Target: 5'- --cGAACGg-GACAuuGUGGUGGUCAa -3' miRNA: 3'- guaCUUGCagCUGUugUACUACCAGU- -5' |
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11357 | 5' | -47 | NC_003084.1 | + | 20392 | 0.66 | 0.999395 |
Target: 5'- gGUGAAUGUgGugaggugcGCAACccGAUGGUCc -3' miRNA: 3'- gUACUUGCAgC--------UGUUGuaCUACCAGu -5' |
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11357 | 5' | -47 | NC_003084.1 | + | 25273 | 0.68 | 0.996969 |
Target: 5'- -cUGAcCGUCGAUcgaugcaucucgaAGCGUGAUGgGUCGg -3' miRNA: 3'- guACUuGCAGCUG-------------UUGUACUAC-CAGU- -5' |
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11357 | 5' | -47 | NC_003084.1 | + | 25614 | 0.68 | 0.997021 |
Target: 5'- gGUcAACgGUgGACAACGUGGUGGUg- -3' miRNA: 3'- gUAcUUG-CAgCUGUUGUACUACCAgu -5' |
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11357 | 5' | -47 | NC_003084.1 | + | 35802 | 0.67 | 0.997928 |
Target: 5'- --cGAACGguaUGGCGAUAUGGUGGg-- -3' miRNA: 3'- guaCUUGCa--GCUGUUGUACUACCagu -5' |
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11357 | 5' | -47 | NC_003084.1 | + | 40821 | 0.74 | 0.90423 |
Target: 5'- uCGUGGACGUCGAU--CGUGAagcggacaagUGGUCGa -3' miRNA: 3'- -GUACUUGCAGCUGuuGUACU----------ACCAGU- -5' |
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11357 | 5' | -47 | NC_003084.1 | + | 67414 | 0.69 | 0.992059 |
Target: 5'- gUAUGAgcacgagACGuUCGACGAgGUGAgGGUCGa -3' miRNA: 3'- -GUACU-------UGC-AGCUGUUgUACUaCCAGU- -5' |
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11357 | 5' | -47 | NC_003084.1 | + | 96859 | 0.66 | 0.999065 |
Target: 5'- uGUGGugGUUGugGAaccgagGGUGGUCu -3' miRNA: 3'- gUACUugCAGCugUUgua---CUACCAGu -5' |
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11357 | 5' | -47 | NC_003084.1 | + | 101997 | 0.67 | 0.997928 |
Target: 5'- -cUGGACGauaUCGugAaggACGUGAUGGUgCAg -3' miRNA: 3'- guACUUGC---AGCugU---UGUACUACCA-GU- -5' |
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11357 | 5' | -47 | NC_003084.1 | + | 104715 | 1.1 | 0.013572 |
Target: 5'- cCAUGAACGUCGACAACAUGAUGGUCAg -3' miRNA: 3'- -GUACUUGCAGCUGUUGUACUACCAGU- -5' |
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11357 | 5' | -47 | NC_003084.1 | + | 107283 | 0.67 | 0.998848 |
Target: 5'- ---aAGCGgcgCGACGAUAUGAuugaggacauUGGUCAg -3' miRNA: 3'- guacUUGCa--GCUGUUGUACU----------ACCAGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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