miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11358 3' -58.8 NC_003084.1 + 25326 0.66 0.697635
Target:  5'- cGGCCCUaccgacgauGCCCGaCACGguggcgggccgguGCGUUGGuacAGCUg -3'
miRNA:   3'- -UCGGGG---------CGGGC-GUGU-------------UGUAACC---UCGA- -5'
11358 3' -58.8 NC_003084.1 + 85584 0.66 0.678122
Target:  5'- uGCCCgGUCCGCugGugGgugaaaUUGuGGGCUa -3'
miRNA:   3'- uCGGGgCGGGCGugUugU------AAC-CUCGA- -5'
11358 3' -58.8 NC_003084.1 + 60576 0.66 0.678122
Target:  5'- aGGCCCaCGUUC-UGCAGCggUGGGGCUc -3'
miRNA:   3'- -UCGGG-GCGGGcGUGUUGuaACCUCGA- -5'
11358 3' -58.8 NC_003084.1 + 89733 0.66 0.65743
Target:  5'- -aUCUCGaCCGCACAGCAaacUUGGGGUg -3'
miRNA:   3'- ucGGGGCgGGCGUGUUGU---AACCUCGa -5'
11358 3' -58.8 NC_003084.1 + 53365 0.67 0.647048
Target:  5'- uGCCCagGCCCGUgacGCGAUggUGGAGg- -3'
miRNA:   3'- uCGGGg-CGGGCG---UGUUGuaACCUCga -5'
11358 3' -58.8 NC_003084.1 + 14804 0.67 0.636655
Target:  5'- aAGCCCgGCCCG-ACGACuaUGaAGCUg -3'
miRNA:   3'- -UCGGGgCGGGCgUGUUGuaACcUCGA- -5'
11358 3' -58.8 NC_003084.1 + 60763 0.68 0.584793
Target:  5'- uGUgCCGCCCuaCACAGCGacucgauggUGGAGCUg -3'
miRNA:   3'- uCGgGGCGGGc-GUGUUGUa--------ACCUCGA- -5'
11358 3' -58.8 NC_003084.1 + 11410 0.68 0.564243
Target:  5'- uGGCCCUGUCCgaGUAUAACGauUUGGuAGCg -3'
miRNA:   3'- -UCGGGGCGGG--CGUGUUGU--AACC-UCGa -5'
11358 3' -58.8 NC_003084.1 + 18043 0.68 0.539845
Target:  5'- --gCCCGCCCGCACGAUggUGGucacauucgguucGCUg -3'
miRNA:   3'- ucgGGGCGGGCGUGUUGuaACCu------------CGA- -5'
11358 3' -58.8 NC_003084.1 + 36203 0.69 0.494173
Target:  5'- aAGCCCCGCaCCGC-CAACuggUGGucCa -3'
miRNA:   3'- -UCGGGGCG-GGCGuGUUGua-ACCucGa -5'
11358 3' -58.8 NC_003084.1 + 5312 0.69 0.474866
Target:  5'- cGGCCCCGgUCGCcCAACG-UGGcuAGCUa -3'
miRNA:   3'- -UCGGGGCgGGCGuGUUGUaACC--UCGA- -5'
11358 3' -58.8 NC_003084.1 + 53771 0.69 0.474866
Target:  5'- aAGCCCCGCaugugccacgagCUGCGCGACcagaacccGGAGCa -3'
miRNA:   3'- -UCGGGGCG------------GGCGUGUUGuaa-----CCUCGa -5'
11358 3' -58.8 NC_003084.1 + 53136 0.7 0.419365
Target:  5'- uGCCCUgcaccuucuuugGCCCGgGCGAC--UGGAGCUu -3'
miRNA:   3'- uCGGGG------------CGGGCgUGUUGuaACCUCGA- -5'
11358 3' -58.8 NC_003084.1 + 97388 0.74 0.272213
Target:  5'- gAGCCCgGCCUGCACGAguUUGGcugacuuugaggGGCa -3'
miRNA:   3'- -UCGGGgCGGGCGUGUUguAACC------------UCGa -5'
11358 3' -58.8 NC_003084.1 + 2108 1.08 0.001114
Target:  5'- cAGCCCCGCCCGCACAACAUUGGAGCUg -3'
miRNA:   3'- -UCGGGGCGGGCGUGUUGUAACCUCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.