miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11359 3' -49.9 NC_003084.1 + 52609 0.66 0.984746
Target:  5'- gGCAUCGCCuucGGUGGUgacucAAGG-UGUGa -3'
miRNA:   3'- aCGUGGUGG---CCACCAa----UUUCaACACg -5'
11359 3' -49.9 NC_003084.1 + 52163 0.73 0.810024
Target:  5'- aGCACCAgUGGUGaGUU-GAGUgcgGUGUa -3'
miRNA:   3'- aCGUGGUgGCCAC-CAAuUUCAa--CACG- -5'
11359 3' -49.9 NC_003084.1 + 49143 0.67 0.983572
Target:  5'- gGUACCcgAUCGGUGGUgugugacaaaUUGUGCu -3'
miRNA:   3'- aCGUGG--UGGCCACCAauuuc-----AACACG- -5'
11359 3' -49.9 NC_003084.1 + 49103 0.75 0.708556
Target:  5'- aGCGCCAcCCGGUGGU---GGUUGa-- -3'
miRNA:   3'- aCGUGGU-GGCCACCAauuUCAACacg -5'
11359 3' -49.9 NC_003084.1 + 48787 0.66 0.988201
Target:  5'- ---uCCACCGGUcGUccaccAAGUUGUGCu -3'
miRNA:   3'- acguGGUGGCCAcCAau---UUCAACACG- -5'
11359 3' -49.9 NC_003084.1 + 47305 0.66 0.991016
Target:  5'- gGCugCgGCCGGUGaGUUuAGGUg--GCg -3'
miRNA:   3'- aCGugG-UGGCCAC-CAAuUUCAacaCG- -5'
11359 3' -49.9 NC_003084.1 + 47006 0.7 0.919584
Target:  5'- cGCACgACCGGUGGUUcaaca--UGCg -3'
miRNA:   3'- aCGUGgUGGCCACCAAuuucaacACG- -5'
11359 3' -49.9 NC_003084.1 + 46442 0.67 0.982753
Target:  5'- gGUacaACCACCGGUGGgcgguAAGUUuuaGCu -3'
miRNA:   3'- aCG---UGGUGGCCACCaau--UUCAAca-CG- -5'
11359 3' -49.9 NC_003084.1 + 46316 0.73 0.780042
Target:  5'- cGC-CCACCGGUGGUUGuaccgauaaauacGcuccAGUUGcUGCu -3'
miRNA:   3'- aCGuGGUGGCCACCAAU-------------U----UCAAC-ACG- -5'
11359 3' -49.9 NC_003084.1 + 44576 0.68 0.95518
Target:  5'- aGUACaacucuaucaugCugUGGUGGUccucauuucUGGGGUUGUGCa -3'
miRNA:   3'- aCGUG------------GugGCCACCA---------AUUUCAACACG- -5'
11359 3' -49.9 NC_003084.1 + 42464 0.66 0.984746
Target:  5'- gGCACgACCGGUGcucgcGGUUaUGCg -3'
miRNA:   3'- aCGUGgUGGCCACcaauuUCAAcACG- -5'
11359 3' -49.9 NC_003084.1 + 37626 0.71 0.870754
Target:  5'- aGCACCACCGGaccGUUGAccguaacauGGUUGaGCu -3'
miRNA:   3'- aCGUGGUGGCCac-CAAUU---------UCAACaCG- -5'
11359 3' -49.9 NC_003084.1 + 36696 0.74 0.760924
Target:  5'- aUGUAauccCCACUGGUGGaacuguaAAGGUUGUGCc -3'
miRNA:   3'- -ACGU----GGUGGCCACCaa-----UUUCAACACG- -5'
11359 3' -49.9 NC_003084.1 + 33763 0.7 0.90696
Target:  5'- cGCACgACUGGgGGaUGGAGUUgaccGUGCa -3'
miRNA:   3'- aCGUGgUGGCCaCCaAUUUCAA----CACG- -5'
11359 3' -49.9 NC_003084.1 + 33370 0.67 0.978186
Target:  5'- cGCACuCcCCGGUGag-GAAGUUGgGCc -3'
miRNA:   3'- aCGUG-GuGGCCACcaaUUUCAACaCG- -5'
11359 3' -49.9 NC_003084.1 + 29926 0.72 0.83735
Target:  5'- aGCACgACCGGUcg--GAAGUUGgUGCg -3'
miRNA:   3'- aCGUGgUGGCCAccaaUUUCAAC-ACG- -5'
11359 3' -49.9 NC_003084.1 + 28408 0.66 0.991016
Target:  5'- -aUACCcgugauCCGGUGGU---GGUUGUGg -3'
miRNA:   3'- acGUGGu-----GGCCACCAauuUCAACACg -5'
11359 3' -49.9 NC_003084.1 + 27755 0.71 0.878509
Target:  5'- gGCACCGuuGGUGG----AGUUGgacGCa -3'
miRNA:   3'- aCGUGGUggCCACCaauuUCAACa--CG- -5'
11359 3' -49.9 NC_003084.1 + 27066 0.71 0.870754
Target:  5'- aGCGCUACCaGUGGUUAcggaugcccGAGUUGg-- -3'
miRNA:   3'- aCGUGGUGGcCACCAAU---------UUCAACacg -5'
11359 3' -49.9 NC_003084.1 + 25945 0.81 0.369484
Target:  5'- aGCACCguugGCCGGUGaa-AAAGUUGUGCa -3'
miRNA:   3'- aCGUGG----UGGCCACcaaUUUCAACACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.