miRNA display CGI


Results 41 - 53 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11359 3' -49.9 NC_003084.1 + 64795 0.68 0.959198
Target:  5'- aGgGCCACCG-----UGAGGUUGUGCg -3'
miRNA:   3'- aCgUGGUGGCcaccaAUUUCAACACG- -5'
11359 3' -49.9 NC_003084.1 + 94309 0.66 0.988201
Target:  5'- cGUAgCACCGGagGGUUG----UGUGCc -3'
miRNA:   3'- aCGUgGUGGCCa-CCAAUuucaACACG- -5'
11359 3' -49.9 NC_003084.1 + 48787 0.66 0.988201
Target:  5'- ---uCCACCGGUcGUccaccAAGUUGUGCu -3'
miRNA:   3'- acguGGUGGCCAcCAau---UUCAACACG- -5'
11359 3' -49.9 NC_003084.1 + 42464 0.66 0.984746
Target:  5'- gGCACgACCGGUGcucgcGGUUaUGCg -3'
miRNA:   3'- aCGUGgUGGCCACcaauuUCAAcACG- -5'
11359 3' -49.9 NC_003084.1 + 18460 0.66 0.984746
Target:  5'- gGC-CCGCaCGGUGGU---GGUUuUGCc -3'
miRNA:   3'- aCGuGGUG-GCCACCAauuUCAAcACG- -5'
11359 3' -49.9 NC_003084.1 + 6409 0.67 0.982332
Target:  5'- aGCuCCACCGGUGcacccuccAGUcGUGCu -3'
miRNA:   3'- aCGuGGUGGCCACcaauu---UCAaCACG- -5'
11359 3' -49.9 NC_003084.1 + 78224 0.66 0.984746
Target:  5'- aGCuCCACCGcgaaacgcagucGUGGUUccGGUuguugUGUGCg -3'
miRNA:   3'- aCGuGGUGGC------------CACCAAuuUCA-----ACACG- -5'
11359 3' -49.9 NC_003084.1 + 651 0.67 0.98057
Target:  5'- cGCACCAUUGc-GGUUccauccucGGUUGUGCg -3'
miRNA:   3'- aCGUGGUGGCcaCCAAuu------UCAACACG- -5'
11359 3' -49.9 NC_003084.1 + 33370 0.67 0.978186
Target:  5'- cGCACuCcCCGGUGag-GAAGUUGgGCc -3'
miRNA:   3'- aCGUG-GuGGCCACcaaUUUCAACaCG- -5'
11359 3' -49.9 NC_003084.1 + 97423 0.67 0.975594
Target:  5'- gGCACCGCCaGGUGGUUcccgcuGacGUGg -3'
miRNA:   3'- aCGUGGUGG-CCACCAAuuu---CaaCACg -5'
11359 3' -49.9 NC_003084.1 + 100917 0.67 0.972784
Target:  5'- aGCcCCACCGGUGGagucaagAAGGUUc-GCu -3'
miRNA:   3'- aCGuGGUGGCCACCaa-----UUUCAAcaCG- -5'
11359 3' -49.9 NC_003084.1 + 25740 0.68 0.969746
Target:  5'- aGCACCAgCGGcccgGGUgcacgcuGGacgUGUGCg -3'
miRNA:   3'- aCGUGGUgGCCa---CCAauu----UCa--ACACG- -5'
11359 3' -49.9 NC_003084.1 + 3530 1.12 0.004678
Target:  5'- gUGCACCACCGGUGGUUAAAGUUGUGCc -3'
miRNA:   3'- -ACGUGGUGGCCACCAAUUUCAACACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.