miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11359 3' -49.9 NC_003084.1 + 97423 0.67 0.975594
Target:  5'- gGCACCGCCaGGUGGUUcccgcuGacGUGg -3'
miRNA:   3'- aCGUGGUGG-CCACCAAuuu---CaaCACg -5'
11359 3' -49.9 NC_003084.1 + 100917 0.67 0.972784
Target:  5'- aGCcCCACCGGUGGagucaagAAGGUUc-GCu -3'
miRNA:   3'- aCGuGGUGGCCACCaa-----UUUCAAcaCG- -5'
11359 3' -49.9 NC_003084.1 + 61278 0.68 0.969746
Target:  5'- gUGCACCGagCGGUGGcgugguGGUcGUGUa -3'
miRNA:   3'- -ACGUGGUg-GCCACCaauu--UCAaCACG- -5'
11359 3' -49.9 NC_003084.1 + 25740 0.68 0.969746
Target:  5'- aGCACCAgCGGcccgGGUgcacgcuGGacgUGUGCg -3'
miRNA:   3'- aCGUGGUgGCCa---CCAauu----UCa--ACACG- -5'
11359 3' -49.9 NC_003084.1 + 3653 0.68 0.966474
Target:  5'- --aACCACCGGUGGUgcaccGUUGa-- -3'
miRNA:   3'- acgUGGUGGCCACCAauuu-CAACacg -5'
11359 3' -49.9 NC_003084.1 + 64795 0.68 0.959198
Target:  5'- aGgGCCACCG-----UGAGGUUGUGCg -3'
miRNA:   3'- aCgUGGUGGCcaccaAUUUCAACACG- -5'
11359 3' -49.9 NC_003084.1 + 5215 0.68 0.95518
Target:  5'- cGCACCACCGGUaGGUggaccGGUa---- -3'
miRNA:   3'- aCGUGGUGGCCA-CCAauu--UCAacacg -5'
11359 3' -49.9 NC_003084.1 + 44576 0.68 0.95518
Target:  5'- aGUACaacucuaucaugCugUGGUGGUccucauuucUGGGGUUGUGCa -3'
miRNA:   3'- aCGUG------------GugGCCACCA---------AUUUCAACACG- -5'
11359 3' -49.9 NC_003084.1 + 76234 0.68 0.95518
Target:  5'- aUGUcCCACCGGUGcccaggUGAGGgaaaaUGUGCc -3'
miRNA:   3'- -ACGuGGUGGCCACca----AUUUCa----ACACG- -5'
11359 3' -49.9 NC_003084.1 + 10506 0.68 0.953924
Target:  5'- uUGCACgACUGGUGGaUAGGGUggacaaugagacgaUGacUGCg -3'
miRNA:   3'- -ACGUGgUGGCCACCaAUUUCA--------------AC--ACG- -5'
11359 3' -49.9 NC_003084.1 + 5987 0.69 0.950902
Target:  5'- gGCAa-ACgGGUGGUgcGAG-UGUGCa -3'
miRNA:   3'- aCGUggUGgCCACCAauUUCaACACG- -5'
11359 3' -49.9 NC_003084.1 + 65701 0.69 0.94636
Target:  5'- -uCACCACCGGUGccGUUGgcAAGUcccgGUGUg -3'
miRNA:   3'- acGUGGUGGCCAC--CAAU--UUCAa---CACG- -5'
11359 3' -49.9 NC_003084.1 + 16745 0.69 0.94636
Target:  5'- gGgGCCGCCGGaGGUgaAAAGUUGcuagagGCa -3'
miRNA:   3'- aCgUGGUGGCCaCCAa-UUUCAACa-----CG- -5'
11359 3' -49.9 NC_003084.1 + 47006 0.7 0.919584
Target:  5'- cGCACgACCGGUGGUUcaaca--UGCg -3'
miRNA:   3'- aCGUGgUGGCCACCAAuuucaacACG- -5'
11359 3' -49.9 NC_003084.1 + 6365 0.7 0.919584
Target:  5'- gGCACCAUUGGacagGGUgauGGagGUGCa -3'
miRNA:   3'- aCGUGGUGGCCa---CCAauuUCaaCACG- -5'
11359 3' -49.9 NC_003084.1 + 91437 0.7 0.91776
Target:  5'- cGgACCACCGGUGGUUcagcauauuccggcGAAGcuagcUGCa -3'
miRNA:   3'- aCgUGGUGGCCACCAA--------------UUUCaac--ACG- -5'
11359 3' -49.9 NC_003084.1 + 85580 0.7 0.913408
Target:  5'- cGguCCGCUGGUGGgUGAAaUUGUGg -3'
miRNA:   3'- aCguGGUGGCCACCaAUUUcAACACg -5'
11359 3' -49.9 NC_003084.1 + 33763 0.7 0.90696
Target:  5'- cGCACgACUGGgGGaUGGAGUUgaccGUGCa -3'
miRNA:   3'- aCGUGgUGGCCaCCaAUUUCAA----CACG- -5'
11359 3' -49.9 NC_003084.1 + 62180 0.71 0.878509
Target:  5'- aGCAaCGgUGGUGGUggcggcGGUUGUGCa -3'
miRNA:   3'- aCGUgGUgGCCACCAauu---UCAACACG- -5'
11359 3' -49.9 NC_003084.1 + 27755 0.71 0.878509
Target:  5'- gGCACCGuuGGUGG----AGUUGgacGCa -3'
miRNA:   3'- aCGUGGUggCCACCaauuUCAACa--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.