miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11359 5' -54 NC_003084.1 + 106174 0.66 0.919255
Target:  5'- cCCGCACcUGGCCUccauggAGCgGUugUGGUGu -3'
miRNA:   3'- -GGUGUGcGUUGGA------UCGaCGugACCAC- -5'
11359 5' -54 NC_003084.1 + 24355 0.66 0.906954
Target:  5'- cUCGCACGUAACCU-GCUcGCACa---- -3'
miRNA:   3'- -GGUGUGCGUUGGAuCGA-CGUGaccac -5'
11359 5' -54 NC_003084.1 + 33273 0.67 0.886597
Target:  5'- aCGCcgAUGCGGCCUAcucacucacGCUGCACggGGUc -3'
miRNA:   3'- gGUG--UGCGUUGGAU---------CGACGUGa-CCAc -5'
11359 5' -54 NC_003084.1 + 102837 0.69 0.794494
Target:  5'- gCCACACGCAcuggGCCUGGaCaacguuuuuggUGCugUcGGUGc -3'
miRNA:   3'- -GGUGUGCGU----UGGAUC-G-----------ACGugA-CCAC- -5'
11359 5' -54 NC_003084.1 + 64037 0.69 0.784986
Target:  5'- aUACAgGUAGCCcaaguGCucccUGCACUGGUGa -3'
miRNA:   3'- gGUGUgCGUUGGau---CG----ACGUGACCAC- -5'
11359 5' -54 NC_003084.1 + 25888 0.69 0.772404
Target:  5'- uCCACACGCAcacguccagcgugcACCcgGGC--CGCUGGUGc -3'
miRNA:   3'- -GGUGUGCGU--------------UGGa-UCGacGUGACCAC- -5'
11359 5' -54 NC_003084.1 + 75376 0.7 0.725165
Target:  5'- gCCGCGCGCAcgcuccGCCUGGCcauuacgcccgUGUACU-GUGg -3'
miRNA:   3'- -GGUGUGCGU------UGGAUCG-----------ACGUGAcCAC- -5'
11359 5' -54 NC_003084.1 + 56597 0.72 0.577094
Target:  5'- gCACAUGUGACC-AGCaGCAcCUGGUGu -3'
miRNA:   3'- gGUGUGCGUUGGaUCGaCGU-GACCAC- -5'
11359 5' -54 NC_003084.1 + 64766 0.73 0.566563
Target:  5'- -aGCugGCGuCCUAGUUGCGCUuGUGg -3'
miRNA:   3'- ggUGugCGUuGGAUCGACGUGAcCAC- -5'
11359 5' -54 NC_003084.1 + 1653 0.76 0.391061
Target:  5'- cCCGCACcUGGCCUccauggAGCUGCugUGGUGu -3'
miRNA:   3'- -GGUGUGcGUUGGA------UCGACGugACCAC- -5'
11359 5' -54 NC_003084.1 + 28213 0.76 0.382366
Target:  5'- gCCACACGCc-CCggGGCUGCAUaugGGUGg -3'
miRNA:   3'- -GGUGUGCGuuGGa-UCGACGUGa--CCAC- -5'
11359 5' -54 NC_003084.1 + 3565 0.92 0.041294
Target:  5'- aCCACACcgAACCUAGCUGCACUGGUGc -3'
miRNA:   3'- -GGUGUGcgUUGGAUCGACGUGACCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.