Results 1 - 7 of 7 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11360 | 3' | -53.3 | NC_003084.1 | + | 104291 | 0.66 | 0.932951 |
Target: 5'- -cGAUGaCGGUCGUUuGUugGGUGGCAAa -3' miRNA: 3'- ccUUACaGCCGGCAAuCG--UCACCGUU- -5' |
|||||||
11360 | 3' | -53.3 | NC_003084.1 | + | 60808 | 0.66 | 0.921788 |
Target: 5'- cGGAUGUucacucCGGCC---AGCAGUGGUGAc -3' miRNA: 3'- cCUUACA------GCCGGcaaUCGUCACCGUU- -5' |
|||||||
11360 | 3' | -53.3 | NC_003084.1 | + | 36167 | 0.66 | 0.915807 |
Target: 5'- -uAAUGUCGccaGCCGagUGGgAGUGGCAc -3' miRNA: 3'- ccUUACAGC---CGGCa-AUCgUCACCGUu -5' |
|||||||
11360 | 3' | -53.3 | NC_003084.1 | + | 88917 | 0.66 | 0.909563 |
Target: 5'- uGGugggGUCGGCCau--GCGGUGGUg- -3' miRNA: 3'- -CCuua-CAGCCGGcaauCGUCACCGuu -5' |
|||||||
11360 | 3' | -53.3 | NC_003084.1 | + | 39590 | 0.67 | 0.899027 |
Target: 5'- cGGAGUGUauuuggugucacgaaCgGGCCG--GGCGGUGGUGAc -3' miRNA: 3'- -CCUUACA---------------G-CCGGCaaUCGUCACCGUU- -5' |
|||||||
11360 | 3' | -53.3 | NC_003084.1 | + | 9520 | 0.67 | 0.877509 |
Target: 5'- uGGcAAUGUCGGUgauaucgaagcgucuCGUgAGCgAGUGGCAc -3' miRNA: 3'- -CC-UUACAGCCG---------------GCAaUCG-UCACCGUu -5' |
|||||||
11360 | 3' | -53.3 | NC_003084.1 | + | 3822 | 1.09 | 0.002986 |
Target: 5'- cGGAAUGUCGGCCGUUAGCAGUGGCAAa -3' miRNA: 3'- -CCUUACAGCCGGCAAUCGUCACCGUU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home