Results 21 - 40 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11360 | 5' | -59.4 | NC_003084.1 | + | 71634 | 0.69 | 0.435629 |
Target: 5'- cAACCAUCgggGCUUCCAGUUCCGaUACCAg -3' miRNA: 3'- -UUGGUGG---UGGAGGUCGAGGUgGUGGU- -5' |
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11360 | 5' | -59.4 | NC_003084.1 | + | 10157 | 0.68 | 0.541968 |
Target: 5'- cAGCgGCCuuUUUCAGCUCCugUGCCAu -3' miRNA: 3'- -UUGgUGGugGAGGUCGAGGugGUGGU- -5' |
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11360 | 5' | -59.4 | NC_003084.1 | + | 51294 | 0.68 | 0.531885 |
Target: 5'- gGAgCACCA-CUCCAGCUC-ACCACa- -3' miRNA: 3'- -UUgGUGGUgGAGGUCGAGgUGGUGgu -5' |
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11360 | 5' | -59.4 | NC_003084.1 | + | 62054 | 0.68 | 0.49229 |
Target: 5'- cGCCACCACCaCCGuuGCUaCCACUACa- -3' miRNA: 3'- uUGGUGGUGGaGGU--CGA-GGUGGUGgu -5' |
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11360 | 5' | -59.4 | NC_003084.1 | + | 6377 | 0.68 | 0.515896 |
Target: 5'- uGACCACCACaaugUCCcguucgcgagacgauAGCUCCACCGgugcacccuCCAg -3' miRNA: 3'- -UUGGUGGUGg---AGG---------------UCGAGGUGGU---------GGU- -5' |
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11360 | 5' | -59.4 | NC_003084.1 | + | 51416 | 0.68 | 0.531885 |
Target: 5'- gGAgCACCA-CUCCAGCUC-ACCACa- -3' miRNA: 3'- -UUgGUGGUgGAGGUCGAGgUGGUGgu -5' |
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11360 | 5' | -59.4 | NC_003084.1 | + | 3276 | 0.68 | 0.531884 |
Target: 5'- cGCCAUCACUUCCcaagcucgaagAGCUCCGCUgguGCUg -3' miRNA: 3'- uUGGUGGUGGAGG-----------UCGAGGUGG---UGGu -5' |
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11360 | 5' | -59.4 | NC_003084.1 | + | 15307 | 0.67 | 0.593197 |
Target: 5'- cAACCACCGCCacCCuGUUCgCAagcuuCCACCAg -3' miRNA: 3'- -UUGGUGGUGGa-GGuCGAG-GU-----GGUGGU- -5' |
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11360 | 5' | -59.4 | NC_003084.1 | + | 94582 | 0.67 | 0.593197 |
Target: 5'- cGACCAaaaCGCgCUCCA-CUCgUACCACCAg -3' miRNA: 3'- -UUGGUg--GUG-GAGGUcGAG-GUGGUGGU- -5' |
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11360 | 5' | -59.4 | NC_003084.1 | + | 42284 | 0.67 | 0.552113 |
Target: 5'- gGACCACUACaacgcCCAGUUCgGCC-CCAa -3' miRNA: 3'- -UUGGUGGUGga---GGUCGAGgUGGuGGU- -5' |
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11360 | 5' | -59.4 | NC_003084.1 | + | 15785 | 0.67 | 0.59734 |
Target: 5'- cGCgCAgCACgUCCggcauuuugguguacAGCUCCACCGCUAg -3' miRNA: 3'- uUG-GUgGUGgAGG---------------UCGAGGUGGUGGU- -5' |
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11360 | 5' | -59.4 | NC_003084.1 | + | 104682 | 0.67 | 0.548048 |
Target: 5'- cACCAgCGCCgagUUCAGCUCCucggauacacgcuCCACCAu -3' miRNA: 3'- uUGGUgGUGG---AGGUCGAGGu------------GGUGGU- -5' |
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11360 | 5' | -59.4 | NC_003084.1 | + | 85767 | 0.67 | 0.562316 |
Target: 5'- gGACCGCaaaGCCUCaauuucacGCcuggCCACCGCCAa -3' miRNA: 3'- -UUGGUGg--UGGAGgu------CGa---GGUGGUGGU- -5' |
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11360 | 5' | -59.4 | NC_003084.1 | + | 43482 | 0.67 | 0.582865 |
Target: 5'- cGCCGCCACCaaguguacCCAGUaa-GCCGCCAg -3' miRNA: 3'- uUGGUGGUGGa-------GGUCGaggUGGUGGU- -5' |
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11360 | 5' | -59.4 | NC_003084.1 | + | 51618 | 0.67 | 0.593197 |
Target: 5'- -uCCAuauCCugCUCCAuauuccGCUCCucgACCACCAg -3' miRNA: 3'- uuGGU---GGugGAGGU------CGAGG---UGGUGGU- -5' |
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11360 | 5' | -59.4 | NC_003084.1 | + | 45693 | 0.67 | 0.607711 |
Target: 5'- cACCACCgaguaagcgccauuaACCUCCAGUUCCuCCGg-- -3' miRNA: 3'- uUGGUGG---------------UGGAGGUCGAGGuGGUggu -5' |
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11360 | 5' | -59.4 | NC_003084.1 | + | 17477 | 0.66 | 0.655541 |
Target: 5'- uGAgCGCCGggUCCAGCUCCuCCAUUAu -3' miRNA: 3'- -UUgGUGGUggAGGUCGAGGuGGUGGU- -5' |
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11360 | 5' | -59.4 | NC_003084.1 | + | 70106 | 0.66 | 0.634747 |
Target: 5'- cACCACCaACCU-CAGCUCC-UCGCUc -3' miRNA: 3'- uUGGUGG-UGGAgGUCGAGGuGGUGGu -5' |
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11360 | 5' | -59.4 | NC_003084.1 | + | 30280 | 0.66 | 0.655541 |
Target: 5'- gGugCACCGCaUCCGGcCUCaucCCACCGa -3' miRNA: 3'- -UugGUGGUGgAGGUC-GAGgu-GGUGGU- -5' |
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11360 | 5' | -59.4 | NC_003084.1 | + | 96725 | 0.66 | 0.645149 |
Target: 5'- ---gACCACCcUCGGUUCCacaACCACCAc -3' miRNA: 3'- uuggUGGUGGaGGUCGAGG---UGGUGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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