Results 41 - 47 of 47 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 11360 | 5' | -59.4 | NC_003084.1 | + | 70106 | 0.66 | 0.634747 |
|
Target: 5'- cACCACCaACCU-CAGCUCC-UCGCUc -3' miRNA: 3'- uUGGUGG-UGGAgGUCGAGGuGGUGGu -5' |
|||||||
| 11360 | 5' | -59.4 | NC_003084.1 | + | 25480 | 0.66 | 0.634747 |
|
Target: 5'- uACCAaCGCa-CCGGC-CCGCCACCGu -3' miRNA: 3'- uUGGUgGUGgaGGUCGaGGUGGUGGU- -5' |
|||||||
| 11360 | 5' | -59.4 | NC_003084.1 | + | 96004 | 0.66 | 0.634747 |
|
Target: 5'- cACCAgUAUgUCCAGCUCC-UUGCCAg -3' miRNA: 3'- uUGGUgGUGgAGGUCGAGGuGGUGGU- -5' |
|||||||
| 11360 | 5' | -59.4 | NC_003084.1 | + | 21543 | 0.66 | 0.645149 |
|
Target: 5'- uAACUAUCACC-CCAaa-CCACCACCGc -3' miRNA: 3'- -UUGGUGGUGGaGGUcgaGGUGGUGGU- -5' |
|||||||
| 11360 | 5' | -59.4 | NC_003084.1 | + | 96725 | 0.66 | 0.645149 |
|
Target: 5'- ---gACCACCcUCGGUUCCacaACCACCAc -3' miRNA: 3'- uuggUGGUGGaGGUCGAGG---UGGUGGU- -5' |
|||||||
| 11360 | 5' | -59.4 | NC_003084.1 | + | 30280 | 0.66 | 0.655541 |
|
Target: 5'- gGugCACCGCaUCCGGcCUCaucCCACCGa -3' miRNA: 3'- -UugGUGGUGgAGGUC-GAGgu-GGUGGU- -5' |
|||||||
| 11360 | 5' | -59.4 | NC_003084.1 | + | 17477 | 0.66 | 0.655541 |
|
Target: 5'- uGAgCGCCGggUCCAGCUCCuCCAUUAu -3' miRNA: 3'- -UUgGUGGUggAGGUCGAGGuGGUGGU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home