Results 41 - 47 of 47 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 11360 | 5' | -59.4 | NC_003084.1 | + | 97215 | 0.73 | 0.284109 |
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Target: 5'- cGGCCAUCACCaaaucggCCAGCUCgGCCaACCu -3' miRNA: 3'- -UUGGUGGUGGa------GGUCGAGgUGG-UGGu -5' |
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| 11360 | 5' | -59.4 | NC_003084.1 | + | 100978 | 0.73 | 0.277405 |
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Target: 5'- cACCACCACCgCCg---CCACCACCAc -3' miRNA: 3'- uUGGUGGUGGaGGucgaGGUGGUGGU- -5' |
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| 11360 | 5' | -59.4 | NC_003084.1 | + | 104769 | 0.74 | 0.245771 |
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Target: 5'- cACCACCAcauCCUCCGG-UCCACCAauCCAu -3' miRNA: 3'- uUGGUGGU---GGAGGUCgAGGUGGU--GGU- -5' |
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| 11360 | 5' | -59.4 | NC_003084.1 | + | 54536 | 0.75 | 0.191498 |
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Target: 5'- -cCCACCACC-CCAGCUCCAaguCCAg -3' miRNA: 3'- uuGGUGGUGGaGGUCGAGGUgguGGU- -5' |
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| 11360 | 5' | -59.4 | NC_003084.1 | + | 85175 | 0.76 | 0.164222 |
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Target: 5'- uACUACCACCgacaauuuugUUCAGCUCCACCACg- -3' miRNA: 3'- uUGGUGGUGG----------AGGUCGAGGUGGUGgu -5' |
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| 11360 | 5' | -59.4 | NC_003084.1 | + | 71148 | 0.79 | 0.110742 |
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Target: 5'- cGACCGCCAgCUUCAGgUCCGCCACgCAg -3' miRNA: 3'- -UUGGUGGUgGAGGUCgAGGUGGUG-GU- -5' |
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| 11360 | 5' | -59.4 | NC_003084.1 | + | 3859 | 1.05 | 0.001344 |
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Target: 5'- cAACCACCACCUCCAGCUCCACCACCAc -3' miRNA: 3'- -UUGGUGGUGGAGGUCGAGGUGGUGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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